Publications

2024

Best AJ, Braunschweig U, Wu M, Farhangmehr S, Pasculescu A, Lim JJ, Comsa LC, Jen M, Wang J, Datti A, Wrana JL, Cordes SP, Al-Awar R, Han H, Blencowe BJ (2024) High-throughput sensitive screening of small molecule modulators of microexon alternative splicing using dual Nano and Firefly luciferase reporters. Nat Commun 15: 6328

Lim JJ, Vining KH, Mooney DJ, Blencowe BJ (2024) Matrix stiffness-dependent regulation of immunomodulatory genes in human MSCs is associated with the lncRNA CYTOR. Proc Natl Acad Sci U S A 121: e2404146121

Ni Z, Ahmed N, Nabeel-Shah S, Guo X, Pu S, Song J, Marcon E, Burke GL, Tong AHY, Chan K, Ha KCH, Blencowe BJ, Moffat J, Greenblatt JF (2024) Identifying human pre-mRNA cleavage and polyadenylation factors by genome-wide CRISPR screens using a dual fluorescence readthrough reporter. Nucleic Acids Res 52: 4483-4501

Zhuravskaya A, Yap K, Hamid F, Makeyev EV (2024) Alternative splicing coupled to nonsense-mediated decay coordinates downregulation of non-neuronal genes in developing mouse neurons. Genome Biol 25: 162

Horton S, Mastrolia V, Jackson RE, Kemlo S, Pereira Machado PM, Carbajal MA, Hindges R, Fleck RA, Aguiar P, Neves G, Burrone J (2024) Excitatory and inhibitory synapses show a tight subcellular correlation that weakens over development. Cell Rep 43: 114361

Li JD, Taipale M, Blencowe BJ (2024) Efficient, specific, and combinatorial control of endogenous exon splicing with dCasRx-RBM25. Mol Cell

Beau M, Herzfeld DJ, Naveros F, Hemelt ME, D'Agostino F, Oostland M, Sánchez-López A, Chung YY, Michael Maibach , Kyranakis S, Stabb HN, Martínez Lopera MG, Lajko A, Zedler M, Ohmae S, Hall NJ, Clark BA, Cohen D, Lisberger SG, Kostadinov D, Hull C, Häusser M, Medina JF (2024) A deep-learning strategy to identify cell types across species from high-density extracellular recordings. bioRxiv

Mateus JC, Sousa MM, Burrone J, Aguiar P (2024) Beyond a Transmission Cable-New Technologies to Reveal the Richness in Axonal Electrophysiology. J Neurosci 44

Marín O (2024) Parvalbumin interneuron deficits in schizophrenia. Eur Neuropsychopharmacol 82: 44-52

Gogou C, Beugelink JW, Frias CP, Kresik L, Jaroszynska N, Drescher U, Janssen BJC, Hindges R, Meijer DH (2024) Alternative splicing controls teneurin-3 compact dimer formation for neuronal recognition. Nat Commun 15: 3648

Pellegrini L, Silva-Vargas V, Patrizi A (2024) Breakthroughs in choroid plexus and CSF biology from the first European Choroid plexus Scientific Forum (ECSF). Fluids Barriers CNS 21: 43

Li S, Shea QTK, Ling YT, Zheng YP (2024) Investigation of 3D vessel reconstruction under Doppler imaging with phantoms: Towards reconstruction of the Circle of Willis. Ultrasonics 141: 107332

Perez-Sisques L, Bhatt S, Matuleviciute R, Gileadi T, Kramar E, Graham A, Garcia FG, Keiser A, Matheos DP, Cain JA, Pittman AM, Andreae LC, Fernandes C, Wood MA, Giese KP, Basson MA (2024) The intellectual disability risk gene Kdm5b regulates long term memory consolidation in the hippocampus. J Neurosci

Ellingford RA, Tojo M, Basson MA, Andreae LC (2024) Male-Dominant Effects of Chd8 Haploinsufficiency on Synaptic Phenotypes during Development in Mouse Prefrontal Cortex. ACS Chem Neurosci 15: 1635-1642

Cole N, Harvey M, Myers-Joseph D, Gilra A, Khan A (2024) Prediction error signals in anterior cingulate cortex drive task-switching bioRxiv

Mòdol L, Moissidis M, Selten M, Oozeer F, Marín O (2024) Somatostatin interneurons control the timing of developmental desynchronization in cortical networks. Neuron

Folgueira M, Clarke JDW (2024) Telencephalic eversion in embryos and early larvae of four teleost species. Evol Dev 26: e12474

Cubillos P, Ditzer N, Kolodziejczyk A, Schwenk G, Hoffmann J, Schütze TM, Derihaci RP, Birdir C, Köllner JE, Petzold A, Sarov M, Martin U, Long KR, Wimberger P, Albert M (2024) The growth factor EPIREGULIN promotes basal progenitor cell proliferation in the developing neocortex. EMBO J

Makeyev EV, Huang S (2024) The perinucleolar compartment: structure, function, and utility in anti-cancer drug development. Nucleus 15: 2306777

Read E, Hindges R (2024) A novel locomotion-based prepulse inhibition assay in zebrafish larvae. MicroPubl Biol 2024

Ganier C, Mazin P, Herrera-Oropeza G, Du-Harpur X, Blakeley M, Gabriel J, Predeus AV, Cakir B, Prete M, Harun N, Darrigrand JF, Haiser A, Wyles S, Shaw T, Teichmann SA, Haniffa M, Watt FM, Lynch MD (2024) Multiscale spatial mapping of cell populations across anatomical sites in healthy human skin and basal cell carcinoma. Proc Natl Acad Sci U S A 121: e2313326120

Rodríguez-Moreno CB, Cañeque-Rufo H, Flor-García M, Terreros-Roncal J, Moreno-Jiménez EP, Pallas-Bazarra N, Bressa C, Larrosa M, Cafini F, Llorens-Martín M (2024) Azithromycin preserves adult hippocampal neurogenesis and behavior in a mouse model of sepsis. Brain Behav Immun 117: 135-148

Myers-Joseph D, Wilmes KA, Fernandez-Otero M, Clopath C, Khan AG (2024) Disinhibition by VIP interneurons is orthogonal to cross-modal attentional modulation in primary visual cortex. Neuron 112: 628-645.e7

2023

Chan K, Farias AG, Lee H, Guvenc F, Mero P, Brown KR, Ward H, Billmann M, Aulakh K, Astori A, Haider S, Marcon E, Braunschweig U, Pu S, Habsid A, Yan Tong AH, Christie-Holmes N, Budylowski P, Ghalami A, Mubareka S, Maguire F, Banerjee A, Mossman KL, Greenblatt J, Gray-Owen SD, Raught B, Blencowe BJ, Taipale M, Myers C, Moffat J (2023) Survival-based CRISPR genetic screens across a panel of permissive cell lines identify common and cell-specific SARS-CoV-2 host factors. Heliyon 9: e12744

Sinitcyn P, Richards AL, Weatheritt RJ, Brademan DR, Marx H, Shishkova E, Meyer JG, Hebert AS, Westphall MS, Blencowe BJ, Cox J, Coon JJ (2023) Global detection of human variants and isoforms by deep proteome sequencing. Nat Biotechnol 41: 1776-1786

Ray D, Laverty KU, Jolma A, Nie K, Samson R, Pour SE, Tam CL, von Krosigk N, Nabeel-Shah S, Albu M, Zheng H, Perron G, Lee H, Najafabadi H, Blencowe B, Greenblatt J, Morris Q, Hughes TR (2023) RNA-binding proteins that lack canonical RNA-binding domains are rarely sequence-specific. Sci Rep 13: 5238

Cui H, Diedrich JK, Wu DC, Lim JJ, Nottingham RM, Moresco JJ, Yates JR, Blencowe BJ, Lambowitz AM, Schimmel P (2023) Arg-tRNA synthetase links inflammatory metabolism to RNA splicing and nuclear trafficking via SRRM2. Nat Cell Biol 25: 592-603

Roth JF, Braunschweig U, Wu M, Li JD, Lin ZY, Larsen B, Weatheritt RJ, Gingras AC, Blencowe BJ (2023) Systematic analysis of alternative exon-dependent interactome remodeling reveals multitasking functions of gene regulatory factors. Mol Cell 83: 4222-4238.e10

Cheesbrough A, Harley P, Riccio F, Wu L, Song W, Lieberam I (2023) A scalable human iPSC-based neuromuscular disease model on suspended biobased elastomer nanofiber scaffolds. Biofabrication 15

Mishra S, Dabaja M, Akhlaq A, Pereira B, Marbach K, Rovcanin M, Chandra R, Caballero A, Fernandes de Abreu D, Ch'ng Q, Alcedo J (2023) Specific sensory neurons and insulin-like peptides modulate food type-dependent oogenesis and fertilization in Caenorhabditis elegans. Elife 12: e83224.

Zeng B, Liu Z, Lu Y, Zhong S, Qin S, Huang L, Zeng Y, Li Z, Dong H, Shi Y, Yang J, Dai Y, Ma Q, Sun L, Bian L, Han D, Chen Y, Qiu X, Wang W, Marín O, Wu Q, Wang Y, Wang X (2023) The single-cell and spatial transcriptional landscape of human gastrulation and early brain development. Cell Stem Cell 30: 851-866.e7.

Kainov Y, Zhuravskaya A, Makeyev EV (2023) Protocol for auxin-inducible depletion of the RNA-binding protein PTBP1 in mouse embryonic stem cells. STAR Protoc 4: 102644.

Beltrán Arranz A, Berninger B (2023) Seizing hope: Advancing cell therapy for pharmaco-resistant epilepsy toward the clinic. Cell Stem Cell 30: 1287-1289.

Felske T, Tocco C, Péron S, Harb K, Alfano C, Galante C, Berninger B, Studer M (2023) Lmo4 synergizes with Fezf2 to promote direct in vivo reprogramming of upper layer cortical neurons and cortical glia towards deep-layer neuron identities. PLoS Biol 21(8): e3002237.

Sezener E, Grabska-Barwińska A, Kostadinov D, Beau M, Krishnagopal S, Budden D, Hutter D, Veness J, Botvinick M, Clopath C, Häusser M, Latham PE (2023) A rapid and efficient learning rule for biological neural circuits. bioRxiv.

Chadwick A, Khan AG, Poort J, Blot A, Hofer SB, Mrsic-Flogel TD, Sahani M (2023) Learning shapes cortical dynamics to enhance integration of relevant sensory input. Neuron 111: 106-120.e10.

Choi S, Schilder BM, Abbasova L, Murphy AE, Skene NG (2023) EpiCompare: R package for the comparison and quality control of epigenomic peak files. Bioinform Adv 3: vbad049.

Puhl CJ, Wefelmeyer W, Burrone J (2023) Cholinergic Stimulation Modulates the Functional Composition of CA3 Cell Types in the Hippocampus. J Neurosci 43: 4972-4983.

Williams J, Hurling C, Munir S, Harley P, Machado CB, Cujba AM, Alvarez-Fallas M, Danovi D, Lieberam I, Sancho R, Beales P, Watt FM (2023) Modelling renal defects in Bardet-Biedl syndrome patients using human iPS cells. Front Cell Dev Biol 11: 1163825.

Fan W, Jurado-Arjona J, Alanis-Lobato G, Péron S, Berger C, Andrade-Navarro MA, Falk S, Berninger B (2023) The transcriptional co-activator Yap1 promotes adult hippocampal neural stem cell activation. EMBO J : e110384.

Rigby M, Grillo FW, Compans B, Neves G, Gallinaro J, Nashashibi S, Horton S, Pereira Machado PM, Carbajal MA, Vizcay-Barrena G, Levet F, Sibarita JB, Kirkland A, Fleck RA, Clopath C, Burrone J (2023) Multi-synaptic boutons are a feature of CA1 hippocampal connections in the stratum oriens. Cell Rep 42: 112397.

Compans B, Burrone J (2023) Chandelier cells shine a light on the formation of GABAergic synapses. Curr Opin Neurobiol 80: 102697.

Harley P, Paredes-Redondo A, Grenci G, Viasnoff V, Lin YY, Lieberam I (2023) 3D Compartmentalised Human Pluripotent Stem Cell-derived Neuromuscular Co-cultures. Bio Protoc 13: e4624.

Jetsonen E, Didio G, Winkel F, Llach Pou M, Boj C, Kuczynski-Noyau L, Võikar V, Guirado R, Taira T, Lauri SE, Castrén E, Umemori J (2023) Activation of TrkB in Parvalbumin interneurons is required for the promotion of reversal learning in spatial and fear memory by antidepressants. Neuropsychopharmacology 48: 1021-1030.

Iannone C, Kainov Y, Zhuravskaya A, Hamid F, Nojima T, Makeyev EV (2023) PTBP1-activated co-transcriptional splicing controls epigenetic status of pluripotent stem cells. Mol Cell 83: 203-218.e9.

Massimo M, Barelli C, Moreno C, Collesi C, Holloway RK, Crespo B, Zentilin L, Williams A, Miron VE, Giacca M, Long KR (2023) Haemorrhage of human foetal cortex associated with SARS-CoV-2 infection. Brain 146: 1175-1185.

Poopalasundaram S, Richardson J, Graham A (2023) Key separable events in the remodelling of the pharyngeal arches. J Anat 243: 100-109.

Berzanskyte I, Riccio F, Machado CB, Bradbury EJ, Lieberam I (2023) Enrichment of human embryonic stem cell-derived V3 interneurons using an Nkx2-2 gene-specific reporter. Sci Rep 13: 2008.

Kebschull JM, Casoni F, Consalez GG, Goldowitz D, Hawkes R, Ruigrok TJH, Schilling K, Wingate R, Wu J, Yeung J, Uusisaari MY (2023) Cerebellum Lecture: the Cerebellar Nuclei-Core of the Cerebellum. Cerebellum.

Cameron D, Mi D, Vinh NN, Webber C, Li M, Marín O, O'Donovan MC, Bray NJ (2023) Single-Nuclei RNA Sequencing of 5 Regions of the Human Prenatal Brain Implicates Developing Neuron Populations in Genetic Risk for Schizophrenia. Biol Psychiatry 93: 157-166.

2022

Nabeel-Shah S, Lee H, Ahmed N, Burke GL, Farhangmehr S, Ashraf K, Pu S, Braunschweig U, Zhong G, Wei H, Tang H, Yang J, Marcon E, Blencowe BJ, Zhang Z, Greenblatt JF (2022) SARS-CoV-2 nucleocapsid protein binds host mRNAs and attenuates stress granules to impair host stress response. iScience 25: 103562

Barutcu AR, Wu M, Braunschweig U, Dyakov BJA, Luo Z, Turner KM, Durbic T, Lin ZY, Weatheritt RJ, Maass PG, Gingras AC, Blencowe BJ (2022) Systematic mapping of nuclear domain-associated transcripts reveals speckles and lamina as hubs of functionally distinct retained introns. Mol Cell 82: 1035-1052.e9

Fagg WS, Liu N, Braunschweig U, Pereira de Castro KL, Chen X, Ditmars FS, Widen SG, Donohue JP, Modis K, Russell WK, Fair JH, Weirauch MT, Blencowe BJ, Garcia-Blanco MA (2022) Definition of germ layer cell lineage alternative splicing programs reveals a critical role for Quaking in specifying cardiac cell fate. Nucleic Acids Res 50: 5313-5334

Han H, Best AJ, Braunschweig U, Mikolajewicz N, Li JD, Roth J, Chowdhury F, Mantica F, Nabeel-Shah S, Parada G, Brown KR, O'Hanlon D, Wei J, Yao Y, Zid AA, Comsa LC, Jen M, Wang J, Datti A, Gonatopoulos-Pournatzis T, Weatheritt RJ, Greenblatt JF, Wrana JL, Irimia M, Gingras AC, Moffat J, Blencowe BJ (2022) Systematic exploration of dynamic splicing networks reveals conserved multistage regulators of neurogenesis. Mol Cell 82: 2982-2999.e14

Song J, Nabeel-Shah S, Pu S, Lee H, Braunschweig U, Ni Z, Ahmed N, Marcon E, Zhong G, Ray D, Ha KCH, Guo X, Zhang Z, Hughes TR, Blencowe BJ, Greenblatt JF (2022) Regulation of alternative polyadenylation by the C2H2-zinc-finger protein Sp1. Mol Cell 82: 3135-3150.e9

Kelava I, Chiaradia I, Pellegrini L, Kalinka AT, Lancaster MA (2022) Androgens increase excitatory neurogenic potential in human brain organoids. Nature 602: 112-116

Kostadinov D, Häusser M (2022) Reward signals in the cerebellum: Origins, targets, and functional implications. Neuron 110: 1290-1303

Hindges R, Lele Z (2022) Editorial: Cell adhesion molecules in neural development and disease. Front Neurosci 16: 1112300

Browne LP, Crespo A, Grubb MS (2022) Rapid presynaptic maturation in naturally regenerating axons of the adult mouse olfactory nerve. Cell Rep 41: 111750

Galante C, Marichal N, Scarante FF, Ghayad LM, Shi Y, Schuurmans C, Berninger B, Péron S (2022) Enhanced proliferation of oligodendrocyte progenitor cells following retrovirus mediated Achaete-scute complex-like 1 overexpression in the postnatal cerebral cortex in vivo. Front Neurosci 16: 919462

Sainsbury TTJ, Diana G, Meyer MP (2022) Topographically localised modulation of tectal cell spatial tuning by complex natural scenes. eNeuro

Moore RE, Pop S, Alleyne C, Clarke JDW (2022) Microtubules are not required to generate a nascent axon in embryonic spinal neurons in vivo. EMBO Rep 23: e52493

Cheung A, Schachermayer G, Biehler A, Wallis A, Missaire M, Hindges R (2022) Teneurin paralogues are able to localise synaptic sites driven by the intracellular domain and have the potential to form cis-heterodimers. Front Neurosci 16: 915149

Nikolaou N, Gordon PM, Hamid F, Taylor R, Lloyd-Jones J, Makeyev EV, Houart C (2022) Cytoplasmic pool of U1 spliceosome protein SNRNP70 shapes the axonal transcriptome and regulates motor connectivity. Curr Biol

Taylor R, Hamid F, Fielding T, Gordon PM, Maloney M, Makeyev EV, Houart C (2022) Prematurely terminated intron-retaining mRNAs invade axons in SFPQ null-driven neurodegeneration and are a hallmark of ALS. Nat Commun 13: 6994

Richard Taylor, Fursham Hamid, Triona Fielding, Patricia M. Gordon, Megan Maloney, Eugene V. Makeyev & Corinne Houart (2022) Prematurely terminated intron-retaining mRNAs invade axons in SFPQ null-driven neurodegeneration and are a hallmark of ALS Nature Communications

Nikolas Nikolaou, Patricia M. Gordon, Fursham Hamid, Richard Taylor, Joshua Lloyd-Jones, Eugene V. Makeyev, Corinne Houart (2022) Cytoplasmic pool of U1 spliceosome protein SNRNP70 shapes the axonal transcriptome and regulates motor connectivity Current Biology

Cheung A., Schachermayer G., Biehler A., Wallis A., Missaire M. & Hindges R. (2022) Teneurin paralogues are able to localise synaptic sites driven by the intracellular domain and have the potential to form cis-heterodimers Frontiers in Neuroscience

Mossink B, van Rhijn JR, Wang S, Linda K, Vitale MR, Zöller JEM, van Hugte EJH, Bak J, Verboven AHA, Selten M, Negwer M, Latour BL, van der Werf I, Keller JM, Klein Gunnewiek TM, Schoenmaker C, Oudakker A, Anania A, Jansen S, Lesch KP, Frega M, van Bokhoven H, Schubert D, Nadif Kasri N (2022) Cadherin-13 is a critical regulator of GABAergic modulation in human stem-cell-derived neuronal networks. Mol Psychiatry 27: 1-18

Poobalasingam T, Bianco F, Oozeer F, Gordon-Weeks PR (2022) The drebrin/EB3 pathway regulates cytoskeletal dynamics to drive neuritogenesis in embryonic cortical neurons. J Neurochem 160: 185-202

Marín O, Moreno N (2022) Agustín González, an Inspirational Leader in Spanish Comparative Neuroanatomy. Brain Behav Evol 96: 174-180

Sheardown E, Torres-Perez JV, Anagianni S, Fraser SE, Vallortigara G, Butterworth B, Miletto-Petrazzini ME, Brennan CH (2022) Characterizing ontogeny of quantity discrimination in zebrafish. Proc Biol Sci 289: 20212544

Newland B, Long KR (2022) Cryogel scaffolds: soft and easy to use tools for neural tissue culture. Neural Regen Res 17: 1981-1983

Tufo C, Poopalasundaram S, Dorrego-Rivas A, Ford MC, Graham A, Grubb MS (2022) Development of the mammalian main olfactory bulb. Development 149

Jackson RE, Compans B, Burrone J (2022) Correlative Live-Cell and Super-Resolution Imaging to Link Presynaptic Molecular Organisation With Function. Front Synaptic Neurosci 14: 830583

Byrne DJ, Lipovsek M, Crespo A, Grubb MS (2022) Brief sensory deprivation triggers plasticity of dopamine-synthesising enzyme expression in genetically labelled olfactory bulb dopaminergic neurons. Eur J Neurosci 56: 3591-3612

Sreenivasan V, Serafeimidou-Pouliou E, Exposito-Alonso D, Bercsenyi K, Bernard C, Bae SE, Oozeer F, Hanusz-Godoy A, Edwards RH, Marín O (2022) Input-specific control of interneuron numbers in nascent striatal networks. Proc Natl Acad Sci U S A 119: e2118430119

Dorrego-Rivas A, Grubb MS (2022) The axon initial segment as a source of neuropathic pain. Brain 145: 1574-1575

Cooper A, Berninger B (2022) Gatekeeping astrocyte identity. Elife 11

Kelkar M, Bohec P, Smith MB, Sreenivasan V, Lisica A, Valon L, Ferber E, Baum B, Salbreux G, Charras G (2022) Spindle reorientation in response to mechanical stress is an emergent property of the spindle positioning mechanisms. Proc Natl Acad Sci U S A 119: e2121868119

Dorrego-Rivas A, Grubb MS (2022) Developing and maintaining a nose-to-brain map of odorant identity. Open Biol 12: 220053

Jackson RE, Compans B, Burrone J (2022) Corrigendum: Correlative Live-Cell and Super-Resolution Imaging to Link Presynaptic Molecular Organisation With Function. Front Synaptic Neurosci 14: 953045

Wong FK, Selten M, Rosés-Novella C, Sreenivasan V, Pallas-Bazarra N, Serafeimidou-Pouliou E, Hanusz-Godoy A, Oozeer F, Edwards R, Marín O (2022) Serotonergic regulation of bipolar cell survival in the developing cerebral cortex. Cell Rep 40: 111037

Leschik J, Gentile A, Cicek C, Péron S, Tevosian M, Beer A, Radyushkin K, Bludau A, Ebner K, Neumann I, Singewald N, Berninger B, Lessmann V, Lutz B (2022) Brain-derived neurotrophic factor expression in serotonergic neurons improves stress resilience and promotes adult hippocampal neurogenesis. Prog Neurobiol 217: 102333

Messina A, Potrich D, Perrino M, Sheardown E, Miletto Petrazzini ME, Luu P, Nadtochiy A, Truong TV, Sovrano VA, Fraser SE, Brennan CH, Vallortigara G (2022) Quantity as a Fish Views It: Behavior and Neurobiology. Front Neuroanat 16: 943504

Ma S, Skarica M, Li Q, Xu C, Risgaard RD, Tebbenkamp ATN, Mato-Blanco X, Kovner R, Krsnik Ž, de Martin X, Luria V, Martí-Pérez X, Liang D, Karger A, Schmidt DK, Gomez-Sanchez Z, Qi C, Gobeske KT, Pochareddy S, Debnath A, Hottman CJ, Spurrier J, Teo L, Boghdadi AG, Homman-Ludiye J, Ely JJ, Daadi EW, Mi D, Daadi M, Marín O, Hof PR, Rasin MR, Bourne J, Sherwood CC, Santpere G, Girgenti MJ, Strittmatter SM, Sousa AMM, Sestan N (2022) Molecular and cellular evolution of the primate dorsolateral prefrontal cortex. Science 377: eabo7257

Velásquez ZD, Rojas-Barón L, Larrazabal C, Salierno M, Gärtner U, Pervizaj-Oruqaj L, Herold S, Hermosilla C, Taubert A (2022) Corrigendum: Neospora caninum infection triggers S-phase arrest and alters nuclear characteristics in primary bovine endothelial host cells. Front Cell Dev Biol 10: 1025995

Hamid F, Alasoo K, Vilo J, Makeyev E (2022) Functional Annotation of Custom Transcriptomes. Methods Mol Biol 2537: 149-172

Yap K, Chung TH, Makeyev EV (2022) Analysis of RNA-containing compartments by hybridization and proximity labeling in cultured human cells. STAR Protoc 3: 101139

Yap K, Chung TH, Makeyev EV (2022) Hybridization-proximity labeling reveals spatially ordered interactions of nuclear RNA compartments. Mol Cell 82: 463-478.e11

Barkus C, Bergmann C, Branco T, Carandini M, Chadderton PT, Galiñanes GL, Gilmour G, Huber D, Huxter JR, Khan AG, King AJ, Maravall M, O'Mahony T, Ragan CI, Robinson ESJ, Schaefer AT, Schultz SR, Sengpiel F, Prescott MJ (2022) Refinements to rodent head fixation and fluid/food control for neuroscience Journal of Neuroscience Methods

Leaman S, Marichal N, Berninger B (2022) Reprogramming cellular identity in vivo. Development 149

Poort J, Wilmes KA, Blot A, Chadwick A, Sahani M, Clopath C, Mrsic-Flogel TD, Hofer SB, Khan AG (2022) Learning and attention increase visual response selectivity through distinct mechanisms. Neuron 110: 686-697.e6

2021

Hekman RM, Hume AJ, Goel RK, Abo KM, Huang J, Blum BC, Werder RB, Suder EL, Paul I, Phanse S, Youssef A, Alysandratos KD, Padhorny D, Ojha S, Mora-Martin A, Kretov D, Ash PEA, Verma M, Zhao J, Patten JJ, Villacorta-Martin C, Bolzan D, Perea-Resa C, Bullitt E, Hinds A, Tilston-Lunel A, Varelas X, Farhangmehr S, Braunschweig U, Kwan JH, McComb M, Basu A, Saeed M, Perissi V, Burks EJ, Layne MD, Connor JH, Davey R, Cheng JX, Wolozin BL, Blencowe BJ, Wuchty S, Lyons SM, Kozakov D, Cifuentes D, Blower M, Kotton DN, Wilson AA, Mühlberger E, Emili A (2021) Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2. Mol Cell 81: 212

Ha KCH, Sterne-Weiler T, Morris Q, Weatheritt RJ, Blencowe BJ (2021) Differential contribution of transcriptomic regulatory layers in the definition of neuronal identity. Nat Commun 12: 335

Ward HN, Aregger M, Gonatopoulos-Pournatzis T, Billmann M, Ohsumi TK, Brown KR, Blencowe BJ, Moffat J, Myers CL (2021) Analysis of combinatorial CRISPR screens with the Orthrus scoring pipeline. Nat Protoc 16: 4766-4798

Aynaud MM, Hernandez JJ, Barutcu S, Braunschweig U, Chan K, Pearson JD, Trcka D, Prosser SL, Kim J, Barrios-Rodiles M, Jen M, Song S, Shen J, Bruce C, Hazlett B, Poutanen S, Attisano L, Bremner R, Blencowe BJ, Mazzulli T, Han H, Pelletier L, Wrana JL (2021) A multiplexed, next generation sequencing platform for high-throughput detection of SARS-CoV-2. Nat Commun 12: 1405

Dumbović G, Braunschweig U, Langner HK, Smallegan M, Biayna J, Hass EP, Jastrzebska K, Blencowe B, Cech TR, Caruthers MH, Rinn JL (2021) Nuclear compartmentalization of TERT mRNA and TUG1 lncRNA is driven by intron retention. Nat Commun 12: 3308

Pellegrini L, Lancaster MA (2021) Breaking the barrier: In vitro models to study choroid plexus development. Curr Opin Cell Biol 73: 41-49

Steinmetz NA, Aydin C, Lebedeva A, Okun M, Pachitariu M, Bauza M, Beau M, Bhagat J, Böhm C, Broux M, Chen S, Colonell J, Gardner RJ, Karsh B, Kloosterman F, Kostadinov D, Mora-Lopez C, O'Callaghan J, Park J, Putzeys J, Sauerbrei B, van Daal RJJ, Vollan AZ, Wang S, Welkenhuysen M, Ye Z, Dudman JT, Dutta B, Hantman AW, Harris KD, Lee AK, Moser EI, O'Keefe J, Renart A, Svoboda K, Häusser M, Haesler S, Carandini M, Harris TD (2021) Neuropixels 2.0: A miniaturized high-density probe for stable, long-term brain recordings. Science 372

Llorca A, Marín O (2021) Orchestrated freedom: new insights into cortical neurogenesis. Curr Opin Neurobiol 66: 48-56

Ucar B, Kajtez J, Foidl BM, Eigel D, Werner C, Long KR, Emnéus J, Bizeau J, Lomora M, Pandit A, Newland B, Humpel C (2021) Biomaterial based strategies to reconstruct the nigrostriatal pathway in organotypic slice co-cultures. Acta Biomater 121: 250-262

Lipovsek M, Bardy C, Cadwell CR, Hadley K, Kobak D, Tripathy SJ (2021) Patch-seq: Past, Present, and Future. J Neurosci 41: 937-946

Galliano E, Hahn C, Browne LP, R Villamayor P, Tufo C, Crespo A, Grubb MS (2021) Brief Sensory Deprivation Triggers Cell Type-Specific Structural and Functional Plasticity in Olfactory Bulb Neurons. J Neurosci 41: 2135-2151

Moglie MJ, Marcovich I, Corradi J, Carpaneto Freixas AE, Gallino S, Plazas PV, Bouzat C, Lipovsek M, Elgoyhen AB (2021) Loss of Choline Agonism in the Inner Ear Hair Cell Nicotinic Acetylcholine Receptor Linked to the α10 Subunit. Front Mol Neurosci 14: 639720

Pollak TA, Vincent A, Iyegbe C, Coutinho E, Jacobson L, Rujescu D, Stone J, Jezequel J, Rogemond V, Jamain S, Groc L, David A, Egerton A, Kahn RS, Honnorat J, Dazzan P, Leboyer M, McGuire P (2021) Relationship Between Serum NMDA Receptor Antibodies and Response to Antipsychotic Treatment in First-Episode Psychosis. Biol Psychiatry 90: 9-15

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Kostic M, Paridaen JTML, Long KR, Kalebic N, Langen B, Grübling N, Wimberger P, Kawasaki H, Namba T, Huttner WB (2019) YAP Activity Is Necessary and Sufficient for Basal Progenitor Abundance and Proliferation in the Developing Neocortex. Cell Rep 27: 1103-1118.e6

Tyson AL, Akhtar AM, Andreae LC (2019) Optimisation and validation of hydrogel-based brain tissue clearing shows uniform expansion across anatomical regions and spatial scales. Sci Rep 9: 12084

Pervolaraki E, Tyson AL, Pibiri F, Poulter SL, Reichelt AC, Rodgers RJ, Clapcote SJ, Lever C, Andreae LC, Dachtler J (2019) The within-subject application of diffusion tensor MRI and CLARITY reveals brain structural changes in Nrxn2 deletion mice Mol Autism 10: 8

Johansson M, Giger FA, Fielding T, Houart C (2019) Dkk1 Controls Cell-Cell Interaction through Regulation of Non-nuclear Beta-Catenin Pools. Dev Cell 51: 775-786.e3

Machado CB, Pluchon P, Harley P, Rigby M, Gonzalez Sabater V, Stevenson DC, Hynes S, Lowe A, Burrone J, Viasnoff V, Lieberam I (2019) In Vitro Modelling of Nerve-Muscle Connectivity in a Compartmentalised Tissue Culture Device. Adv Biosyst 3

Hadjivasiliou Z, Moore RE, McIntosh R, Galea GL, Clarke JDW, Alexandre P (2019) Basal Protrusions Mediate Spatiotemporal Patterns of Spinal Neuron Differentiation. Dev Cell 49: 907-919.e10

Liao M, Kundap U, Rosch RE, Burrows DRW, Meyer MP, Bouchra BOA, Cossette P, Samarut É (2019) Targeted knockout of GABA receptor gamma 2 subunit provokes transient light-induced reflex seizures in zebrafish larvae. Dis Model Mech

Diana G, Sainsbury TTJ, Meyer MP (2019) Bayesian inference of neuronal assemblies. PLoS Comput Biol 15: e1007481

Araya C, Häkkinen HM, Carcamo L, Cerda M, Savy T, Rookyard C, Peyriéras N, Clarke JDW (2019) Cdh2 coordinates Myosin-II dependent internalisation of the zebrafish neural plate. Sci Rep 9: 1835

Campo-Paysaa F, Clarke JD, Wingate RJ (2019) Generation of the squamous epithelial roof of the 4th ventricle. eLife 8

Subathra Poopalasundaram, Jo Richardson, Annabelle Scott, Alex Donovan, Karen Liu and Anthony Graham (2019) Diminution of pharyngeal segmentation and the evolution of the amniotes Zoological Letters 5:6

Nagai T, Trakanant S, Kawasaki M, Kawasaki K, Yamada Y, Watanabe M, Blackburn J, Otsuka-Tanaka Y, Hishinuma M, Kitatmura A, Meguro F, Yamada A, Kodama Y, Maeda T, Zhou Q, Saijo Y, Yasue A, Sharpe PT, Hindges R, Takagi R, Ohazama A (2019) MicroRNAs control eyelid development through regulating Wnt signaling. Dev Dyn

Bragado Alonso S, Reinert JK, Marichal N, Massalini S, Berninger B, Kuner T, Calegari F (2019) An increase in neural stem cells and olfactory bulb adult neurogenesis improves discrimination of highly similar odorants. EMBO J

Favuzzi E, Deogracias R, Marques-Smith A, Maeso P, Jezequel J, Exposito-Alonso D, Balia M, Kroon T, Hinojosa AJ, F Maraver E, Rico B (2019) Distinct molecular programs regulate synapse specificity in cortical inhibitory circuits. Science 363: 413-417

Martínez-Martínez MÁ, Ciceri G, Espinós A, Fernández V, Marín O, Borrell V (2019) Extensive branching of radially-migrating neurons in the mammalian cerebral cortex. J Comp Neurol 527: 1558-1576

Scott R, Sánchez-Aguilera A, van Elst K, Lim L, Dehorter N, Bae SE, Bartolini G, Peles E, Kas MJH, Bruining H, Marín O (2019) Loss of Cntnap2 Causes Axonal Excitability Deficits, Developmental Delay in Cortical Myelination, and Abnormal Stereotyped Motor Behavior. Cereb Cortex 29: 586-597

2018

Ha KCH, Blencowe BJ, Morris Q (2018) QAPA: a new method for the systematic analysis of alternative polyadenylation from RNA-seq data. Genome Biol 19: 45

Sterne-Weiler T, Weatheritt RJ, Best AJ, Ha KCH, Blencowe BJ (2018) Efficient and Accurate Quantitative Profiling of Alternative Splicing Patterns of Any Complexity on a Laptop. Mol Cell 72: 187-200.e6

Gonatopoulos-Pournatzis T, Wu M, Braunschweig U, Roth J, Han H, Best AJ, Raj B, Aregger M, O'Hanlon D, Ellis JD, Calarco JA, Moffat J, Gingras AC, Blencowe BJ (2018) Genome-wide CRISPR-Cas9 Interrogation of Splicing Networks Reveals a Mechanism for Recognition of Autism-Misregulated Neuronal Microexons. Mol Cell 72: 510-524.e12

Ing-Esteves S, Kostadinov D, Marocha J, Sing AD, Joseph KS, Laboulaye MA, Sanes JR, Lefebvre JL (2018) Combinatorial Effects of Alpha- and Gamma-Protocadherins on Neuronal Survival and Dendritic Self-Avoidance. J Neurosci 38: 2713-2729

Wong FK, Bercsenyi K, Sreenivasan V, Portalés A, Fernández-Otero M, Marín O (2018) Pyramidal cell regulation of interneuron survival sculpts cortical networks. Nature 557: 668-673

Kalebic N, Gilardi C, Albert M, Namba T, Long KR, Kostic M, Langen B, Huttner WB (2018) Human-specific Elife 7

Long KR, Newland B, Florio M, Kalebic N, Langen B, Kolterer A, Wimberger P, Huttner WB (2018) Extracellular Matrix Components HAPLN1, Lumican, and Collagen I Cause Hyaluronic Acid-Dependent Folding of the Developing Human Neocortex. Neuron 99: 702-719.e6

Lipovsek M, Wingate RJ (2018) Conserved and divergent development of brainstem vestibular and auditory nuclei. eLife 7

Taylor RD, Heine M, Emptage NJ, Andreae LC (2018) Neuronal Receptors Display Cytoskeleton-Independent Directed Motion on the Plasma Membrane. iScience 10: 234-244

Chai A, Mateus AM, Oozeer F, Sousa-Nunes R (2018) Spatiotemporally controlled genetic perturbation for efficient large-scale studies of cell non-autonomous effects. Elife 7

Karow M, Camp JG, Falk S, Gerber T, Pataskar A, Gac-Santel M, Kageyama J, Brazovskaja A, Garding A, Fan W, Riedemann T, Casamassa A, Smiyakin A, Schichor C, Götz M, Tiwari VK, Treutlein B, Berninger B (2018) Direct pericyte-to-neuron reprogramming via unfolding of a neural stem cell-like program. Nat Neurosci 21: 932-940

Tiwari N, Pataskar A, Péron S, Thakurela S, Sahu SK, Figueres-Oñate M, Marichal N, López-Mascaraque L, Tiwari VK, Berninger B (2018) Stage-Specific Transcription Factors Drive Astrogliogenesis by Remodeling Gene Regulatory Landscapes. Cell Stem Cell 23: 557-571.e8

Karimova M, Baker O, Camgoz A, Naumann R, Buchholz F, Anastassiadis K (2018) A single reporter mouse line for Vika, Flp, Dre, and Cre-recombination. Sci Rep 8: 14453

Zimmermann T, Maroso M, Beer A, Baddenhausen S, Ludewig S, Fan W, Vennin C, Loch S, Berninger B, Hofmann C, Korte M, Soltesz I, Lutz B, Leschik J (2018) Neural stem cell lineage-specific cannabinoid type-1 receptor regulates neurogenesis and plasticity in the adult mouse hippocampus. Cereb Cortex 28: 4454-4471

Yap K, Mukhina S, Zhang G, Tan JSC, Ong HS, Makeyev EV (2018) A Short Tandem Repeat-Enriched RNA Assembles a Nuclear Compartment to Control Alternative Splicing and Promote Cell Survival. Mol Cell

Lim L, Mi D, Llorca A, Marín O (2018) Development and Functional Diversification of Cortical Interneurons. Neuron 100: 294-313

Reh TA, Hindges R (2018) MicroRNAs in Retinal Development. Annu Rev Vis Sci 4: 25-44

Prekop HT, Kroiss A, Rook V, Zagoraiou L, Jessell T, Fernandes C, Delogu A, Wingate R (2018) SOX14 is required for a specific subset of cerebello-olivary projections. J Neurosci 21: 1456-18

Priego N, Zhu L, Monteiro C, Mulders M, Wasilewski D, Bindeman W, Doglio L, Martínez L, Martínez-Saez E, Ramón Y Cajal S, Megías D, Hernández-Encinas E, Blanco-Aparicio C, Martínez L, Zarzuela E, Muñoz J, Fustero-Torre C, Piñeiro-Yáñez E, Hernández-Laín A, Bertero L, Poli V, Sanchez-Martinez M, Menendez JA, Soffietti R, Bosch-Barrera J, Valiente M (2018) Author Correction: STAT3 labels a subpopulation of reactive astrocytes required for brain metastasis. Nat Med 24(9): 1481

Ehsan M, Kelly M, Hooper C, Yavari A, Beglov J, Bellahcene M, Ghataorhe K, Poloni G, Goel A, Kyriakou T, Fleischanderl K, Ehler E, Makeyev E, Lange S, Ashrafian H, Redwood C, Davies B, Watkins H, Gehmlich K (2018) Mutant Muscle LIM Protein C58G causes cardiomyopathy through protein depletion. J Mol Cell Cardiol 121: 287-296

Andreae LC, Basson MA (2018) Sex bias in autism: new insights from Chd8 mutant mice? Nat Neurosci 21: 1144-1146

Javer A, Currie M, Lee CW, Hokanson J, Li K, Martineau CN, Yemini E, Grundy LJ, Li C, Ch'ng Q, Schafer WR, Nollen EAA, Kerr R, Brown AEX (2018) An open-source platform for analyzing and sharing worm-behavior data. Nat Methods 15: 645-646

Taylor SE, Taylor RD, Price J, Andreae LC (2018) Single-molecule fluorescence in-situ hybridization reveals that human SHANK3 mRNA expression varies during development and in autism-associated SHANK3 heterozygosity. Stem Cell Res Ther 9: 206

Hinojosa AJ, Deogracias R, Rico B (2018) The Microtubule Regulator NEK7 Coordinates the Wiring of Cortical Parvalbumin Interneurons. Cell Rep 24: 1231-1242

Laurent P, Ch'ng Q, Jospin M, Chen C, Lorenzo R, de Bono M (2018) Genetic dissection of neuropeptide cell biology at high and low activity in a defined sensory neuron. Proc Natl Acad Sci USA 115: E6890-E6899

Arango C, Díaz-Caneja CM, McGorry PD, Rapoport J, Sommer IE, Vorstman JA, McDaid D, Marín O, Serrano-Drozdowskyj E, Freedman R, Carpenter W (2018) Preventive strategies for mental health. Lancet Psychiatry 5: 591-604

Grillo FW, Neves G, Walker A, Vizcay-Barrena G, Fleck RA, Branco T, Burrone J (2018) A Distance-Dependent Distribution of Presynaptic Boutons Tunes Frequency-Dependent Dendritic Integration. Neuron 99: 275-282.e3

Denaxa M, Neves G, Burrone J, Pachnis V (2018) Homeostatic Regulation of Interneuron Apoptosis During Cortical Development. J Exp Neurosci 12: 1179069518784277

Holzbaur E, Burrone J (2018) Editorial overview: Cellular neuroscience. Curr Opin Neurobiol 51: iv-vi

Andreae LC (2018) FENS-Kavli winter symposium: Review and perspectives on neurological diseases. Eur J Neurosci 48: 1867-1869

Khan AG, Hofer SB (2018) Contextual signals in visual cortex. Curr Opin Neurobiol 52: 131-138

Favuzzi E, Rico B (2018) Molecular diversity underlying cortical excitatory and inhibitory synapse development. Curr Opin Neurobiol 53: 8-15

Lim L, Pakan JMP, Selten MM, Marques-Smith A, Llorca A, Bae SE, Rochefort NL, Marín O (2018) Optimization of interneuron function by direct coupling of cell migration and axonal targeting. Nat Neurosci 21: 920-931

Zhao S, Fan W, Guo X, Xue L, Berninger B, Salierno MJ, Del Campo A (2018) Microenvironments to study migration and somal translocation in cortical neurons. Biomaterials 156: 238-247

Khan AG, Poort J, Chadwick A, Blot A, Sahani M, Mrsic-Flogel TD, Hofer SB (2018) Distinct learning-induced changes in stimulus selectivity and interactions of GABAergic interneuron classes in visual cortex. Nat Neurosci 21: 851-859

Galliano E, Franzoni E, Breton M, Chand AN, Byrne DJ, Murthy VN, Grubb MS (2018) Embryonic and postnatal neurogenesis produce functionally distinct subclasses of dopaminergic neuron. Elife 7: e32373

Fassier C, Fréal A, Gasmi L, Delphin C, Ten Martin D, De Gois S, Tambalo M, Bosc C, Mailly P, Revenu C, Peris L, Bolte S, Schneider-Maunoury S, Houart C, Nothias F, Larcher JC, Andrieux A, Hazan J (2018) Motor axon navigation relies on Fidgetin-like 1-driven microtubule plus end dynamics. J Cell Biol 217: 1719-1738

Constance WD, Mukherjee A, Fisher YE, Pop S, Blanc E, Toyama Y, Williams DW (2018) Neurexin and Neuroligin-based adhesion complexes drive axonal arborisation growth independent of synaptic activity. Elife 7: e31659

Mi D, Li Z, Lim L, Li M, Moissidis M, Yang Y, Gao T, Hu TX, Pratt T, Price DJ, Sestan N, Marín O (2018) Early emergence of cortical interneuron diversity in the mouse embryo. Science 360: 81-85

Giger FA, Houart C (2018) The Birth of the Eye Vesicle: When Fate Decision Equals Morphogenesis. Front Neurosci 12: 87

Denaxa M, Neves G, Rabinowitz A, Kemlo S, Liodis P, Burrone J, Pachnis V (2018) Modulation of Apoptosis Controls Inhibitory Interneuron Number in the Cortex. Cell Rep 22: 1710-1721

Antinucci P, Hindges R (2018) Orientation-Selective Retinal Circuits in Vertebrates. Front Neural Circuits 12: 11

Del Pino I, Rico B, Marín O (2018) Neural circuit dysfunction in mouse models of neurodevelopmental disorders. Curr Opin Neurobiol 48: 174-182

Kiecker C (2018) The origins of the circumventricular organs. J Anat 232: 540-553

Andreae LC, Burrone J (2018) The role of spontaneous neurotransmission in synapse and circuit development. J Neurosci Res 96: 354-359

Kathuria A, Nowosiad P, Jagasia R, Aigner S, Taylor RD, Andreae LC, Gatford NJF, Lucchesi W, Srivastava DP, Price J (2018) Stem cell-derived neurons from autistic individuals with SHANK3 mutation show morphogenetic abnormalities during early development. Mol Psychiatry 23: 735-746

2017

Han H, Braunschweig U, Gonatopoulos-Pournatzis T, Weatheritt RJ, Hirsch CL, Ha KCH, Radovani E, Nabeel-Shah S, Sterne-Weiler T, Wang J, O'Hanlon D, Pan Q, Ray D, Zheng H, Vizeacoumar F, Datti A, Magomedova L, Cummins CL, Hughes TR, Greenblatt JF, Wrana JL, Moffat J, Blencowe BJ (2017) Multilayered Control of Alternative Splicing Regulatory Networks by Transcription Factors. Mol Cell 65: 539-553.e7

Barrios-Rodiles M, Ellis JD, Blencowe BJ, Wrana JL (2017) LUMIER: A Discovery Tool for Mammalian Protein Interaction Networks. Methods Mol Biol 1550: 137-148

Blencowe BJ (2017) The Relationship between Alternative Splicing and Proteomic Complexity. Trends Biochem Sci 42: 407-408

Tapial J, Ha KCH, Sterne-Weiler T, Gohr A, Braunschweig U, Hermoso-Pulido A, Quesnel-Vallières M, Permanyer J, Sodaei R, Marquez Y, Cozzuto L, Wang X, Gómez-Velázquez M, Rayon T, Manzanares M, Ponomarenko J, Blencowe BJ, Irimia M (2017) An atlas of alternative splicing profiles and functional associations reveals new regulatory programs and genes that simultaneously express multiple major isoforms. Genome Res 27: 1759-1768

Gueroussov S, Weatheritt RJ, O'Hanlon D, Lin ZY, Narula A, Gingras AC, Blencowe BJ (2017) Regulatory Expansion in Mammals of Multivalent hnRNP Assemblies that Globally Control Alternative Splicing. Cell 170: 324-339.e23

Peng YR, Tran NM, Krishnaswamy A, Kostadinov D, Martersteck EM, Sanes JR (2017) Satb1 Regulates Contactin 5 to Pattern Dendrites of a Mammalian Retinal Ganglion Cell. Neuron 95: 869-883.e6

Clarke J, Gillingwater T, Graham A, Milz S (2017) Editorial - Journal of Anatomy January 2017. J Anat 230: 1-3

Wright R, Newey SE, Ilie A, Wefelmeyer W, Raimondo JV, Ginham R, Mcllhinney RAJ, Akerman CJ (2017) Neuronal Chloride Regulation via KCC2 Is Modulated through a GABAB Receptor Protein Complex. J Neurosci 37: 5447-5462

Heide M, Long KR, Huttner WB (2017) Novel gene function and regulation in neocortex expansion. Curr Opin Cell Biol 49: 22-30

Hamid FM, Makeyev EV (2017) A mechanism underlying position-specific regulation of alternative splicing. Nucleic Acids Res 45: 12455-12468

Patel DS, Diana G, Entchev EV, Zhan M, Lu H, Ch'ng Q (2017) Quantification of Information Encoded by Gene Expression Levels During Lifespan Modulation Under Broad-range Dietary Restriction in C. elegans. J Vis Exp 16: 126

Azim K, Angonin D, Marcy G, Pieropan F, Rivera A, Donega V, Cantù C, Williams G, Berninger B, Butt AM, Raineteau O (2017) Pharmacogenomic identification of small molecules for lineage specific manipulation of subventricular zone germinal activity. PLoS Biol 15: e2000698

Bicker F, Vasic V, Horta G, Ortega F, Nolte H, Kavyanifar A, Keller S, Stankovic ND, Harter PN, Benedito R, Lutz B, Bäuerle T, Hartwig J, Baumgart J, Krüger M, Radyushkin K, Alberi L, Berninger B, Schmidt MHH (2017) Neurovascular EGFL7 regulates adult neurogenesis in the subventricular zone and thereby affects olfactory perception. Nat Commun 8: 15922

Farrukh A, Ortega F, Fan W, Marichal N, Paez JI, Berninger B, Campo AD, Salierno MJ (2017) Bifunctional Hydrogels Containing the Laminin Motif IKVAV Promote Neurogenesis. Stem Cell Reports 9: 1432-1440

Karakatsani A, Marichal N, Urban S, Kalamakis G, Ghanem A, Schick A, Zhang Y, Conzelmann KK, Rüegg MA, Berninger B, Ruiz de Almodovar C, Gascón S, Kröger S (2017) Neuronal LRP4 regulates synapse formation in the developing CNS. Development 144: 4604-4615

Abbas F, Triplett MA, Goodhill GJ, Meyer MP (2017) A Three-Layer Network Model of Direction Selective Circuits in the Optic Tectum. Front Neural Circuits 11: 88

Furlan G, Cuccioli V, Vuillemin N, Dirian L, Muntasell AJ, Coolen M, Dray N, Bedu S, Houart C, Beaurepaire E, Foucher I, Bally-Cuif L (2017) Life-Long Neurogenic Activity of Individual Neural Stem Cells and Continuous Growth Establish an Outside-In Architecture in the Teleost Pallium. Curr Biol 27: 3288-3301.e3

Gordon-Weeks PR (2017) Phosphorylation of Drebrin and Its Role in Neuritogenesis. Adv Exp Med Biol 1006: 49-60

Dart AE, Gordon-Weeks PR (2017) The Role of Drebrin in Cancer Cell Invasion. Adv Exp Med Biol 1006: 375-389

Lipovsek M, Ledderose J, Butts T, Lafont T, Kiecker C, Wizenmann A, Graham A (2017) The emergence of mesencephalic trigeminal neurons. Neural Dev 12: 11

Favuzzi E, Marques-Smith A, Deogracias R, Winterflood CM, Sánchez-Aguilera A, Mantoan L, Maeso P, Fernandes C, Ewers H, Rico B (2017) Activity-Dependent Gating of Parvalbumin Interneuron Function by the Perineuronal Net Protein Brevican. Neuron 95: 639-655.e10

Bibollet-Bahena O, Okafuji T, Hokamp K, Tear G, Mitchell KJ (2017) A dual-strategy expression screen for candidate connectivity labels in the developing thalamus. PLoS One 12: e0177977

Mukherjee A, Williams DW (2017) More alive than dead: non-apoptotic roles for caspases in neuronal development, plasticity and disease. Cell Death Differ 24: 1411-1421

Evans MD, Tufo C, Dumitrescu AS, Grubb MS (2017) Myosin II activity is required for structural plasticity at the axon initial segment. Eur J Neurosci 46: 1751-1757

Oozeer F, Yates LL, Dean C, Formstone CJ (2017) A role for core planar polarity proteins in cell contact-mediated orientation of planar cell division across the mammalian embryonic skin. Sci Rep 7: 1880

Verbeeren J, Verma B, Niemelä EH, Yap K, Makeyev EV, Frilander MJ (2017) Alternative exon definition events control the choice between nuclear retention and cytoplasmic export of U11/U12-65K mRNA. PLoS Genet 13: e1006824

Mohammed A, O'Hare MB, Warley A, Tear G, Tuxworth RI (2017) in vivo localization of the neuronal ceroid lipofuscinosis proteins, CLN3 and CLN7, at endogenous expression levels. Neurobiol Dis 103: 123-132

Collins KM, Kainov YA, Christodolou E, Ray D, Morris Q, Hughes T, Taylor IA, Makeyev EV, Ramos A (2017) An RRM-ZnF RNA recognition module targets RBM10 to exonic sequences to promote exon exclusion. Nucleic Acids Res 45: 6761-6774

Thomas-Jinu S, Gordon PM, Fielding T, Taylor R, Smith BN, Snowden V, Blanc E, Vance C, Topp S, Wong CH, Bielen H, Williams KL, McCann EP, Nicholson GA, Pan-Vazquez A, Fox AH, Bond CS, Talbot WS, Blair IP, Shaw CE, Houart C (2017) Non-nuclear Pool of Splicing Factor SFPQ Regulates Axonal Transcripts Required for Normal Motor Development. Neuron 94: 322-336.e5

Ingham NJ, Steel KP, Drescher U (2017) On the role of ephrinA2 in auditory function. Hear Res 350: 11-16

Del Pino I, Brotons-Mas JR, Marques-Smith A, Marighetto A, Frick A, Marín O, Rico B (2017) Abnormal wiring of CCK+ basket cells disrupts spatial information coding. Nat Neurosci 20: 784-792

Kosse C, Schöne C, Bracey E, Burdakov D (2017) Orexin-driven GAD65 network of the lateral hypothalamus sets physical activity in mice. Proc Natl Acad Sci U S A 114: 4525-4530

Stockley JH, Evans K, Matthey M, Volbracht K, Agathou S, Mukanowa J, Burrone J, Káradóttir RT (2017) Surpassing light-induced cell damage in vitro with novel cell culture media. Sci Rep 7: 849

Montague K, Lowe AS, Uzquiano A, Knüfer A, Astick M, Price SR, Guthrie S (2017) The assembly of developing motor neurons depends on an interplay between spontaneous activity, type II cadherins and gap junctions. Development 144: 830-836

Walker AS, Neves G, Grillo F, Jackson RE, Rigby M, O'Donnell C, Lowe AS, Vizcay-Barrena G, Fleck RA, Burrone J (2017) Distance-dependent gradient in NMDAR-driven spine calcium signals along tapering dendrites. Proc Natl Acad Sci U S A 114: E1986-E1995

Glebov OO, Jackson RE, Winterflood CM, Owen DM, Barker EA, Doherty P, Ewers H, Burrone J (2017) Nanoscale Structural Plasticity of the Active Zone Matrix Modulates Presynaptic Function. Cell Rep 18: 2715-2728

Dart AE, Worth DC, Muir G, Chandra A, Morris JD, McKee C, Verrill C, Bryant RJ, Gordon-Weeks PR (2017) The drebrin/EB3 pathway drives invasive activity in prostate cancer. Oncogene 36: 4111-4123

McIntosh R, Norris J, Clarke JD, Alexandre P (2017) Spatial distribution and characterization of non-apical progenitors in the zebrafish embryo central nervous system. Open Biol 7(2): 160312

Diana G, Patel DS, Entchev EV, Zhan M, Lu H, Ch'ng Q (2017) Genetic control of encoding strategy in a food-sensing neural circuit. Elife 6: e24040

Trivedi N, Stabley DR, Cain B, Howell D, Laumonnerie C, Ramahi JS, Temirov J, Kerekes RA, Gordon-Weeks PR, Solecki DJ (2017) Drebrin-mediated microtubule-actomyosin coupling steers cerebellar granule neuron nucleokinesis and migration pathway selection. Nat Commun 8: 14484

Cains S, Blomeley C, Kollo M, Rácz R, Burdakov D (2017) Agrp neuron activity is required for alcohol-induced overeating. Nat Commun 8: 14014

Dehorter N, Marichal N, Marín O, Berninger B (2017) Tuning neural circuits by turning the interneuron knob. Curr Opin Neurobiol 42: 144-151

Bielen H, Pal S, Tole S, Houart C (2017) Temporal variations in early developmental decisions: an engine of forebrain evolution. Curr Opin Neurobiol 42: 152-159

Bartolini G, Sánchez-Alcañiz JA, Osório C, Valiente M, García-Frigola C, Marín O (2017) Neuregulin 3 Mediates Cortical Plate Invasion and Laminar Allocation of GABAergic Interneurons. Cell Rep 18: 1157-1170

Delbaere J, Vancamp P, Van Herck SL, Bourgeois NM, Green MJ, Wingate RJ, Darras VM (2017) MCT8 deficiency in Purkinje cells disrupts embryonic chicken cerebellar development. J Endocrinol 232: 259-272

Montague K, Guthrie S, Poparic I (2017) In Vivo and In Vitro Knockdown Approaches in the Avian Embryo as a Means to Study Semaphorin Signaling. Methods Mol Biol 1493: 403-416

2016

Kiecker C, Graham A, Logan M (2016) Differential Cellular Responses to Hedgehog Signalling in Vertebrates-What is the Role of Competence? J Dev Biol 4

Florio M, Namba T, Long K (2016) The Tortuous Routes of Migrating Neurons in the Folding Neocortex. J Neurosci 36: 3887-9

Sousa-Nunes R, Hirth F (2016) Stem cells and asymmetric cell division in Regenerative Medicine - from Protocol to Patient: 1. Biology of Tissue Regeneration: Third Edition Springer International : 87-121

García-González D, Murcia-Belmonte V, Esteban PF, Ortega F, Díaz D, Sánchez-Vera I, Lebrón-Galán R, Escobar-Castañondo L, Martínez-Millán L, Weruaga E, García-Verdugo JM, Berninger B, de Castro F (2016) Anosmin-1 over-expression increases adult neurogenesis in the subventricular zone and neuroblast migration to the olfactory bulb. Brain Struct Funct 221: 239-60

Azim K, Berninger B, Raineteau O (2016) Mosaic Subventricular Origins of Forebrain Oligodendrogenesis. Front Neurosci 10: 107

Bunk EC, Ertaylan G, Ortega F, Pavlou MA, Gonzalez Cano L, Stergiopoulos A, Safaiyan S, Völs S, van Cann M, Politis PK, Simons M, Berninger B, Del Sol A, Schwamborn JC (2016) Prox1 Is Required for Oligodendrocyte Cell Identity in Adult Neural Stem Cells of the Subventricular Zone. Stem Cells 34: 2115-29

Sahu SK, Fritz A, Tiwari N, Kovacs Z, Pouya A, Wüllner V, Bora P, Schacht T, Baumgart J, Peron S, Berninger B, Tiwari VK, Methner A (2016) TOX3 regulates neural progenitor identity. Biochim Biophys Acta 1859: 833-40

Berninger B, Jessberger S (2016) Engineering of Adult Neurogenesis and Gliogenesis. Cold Spring Harb Perspect Biol 8(5): a018861

Thakurela S, Tiwari N, Schick S, Garding A, Ivanek R, Berninger B, Tiwari VK (2016) Mapping gene regulatory circuitry of Pax6 during neurogenesis. Cell Discov 2: 15045

McAvoy KM, Scobie KN, Berger S, Russo C, Guo N, Decharatanachart P, Vega-Ramirez H, Miake-Lye S, Whalen M, Nelson M, Bergami M, Bartsch D, Hen R, Berninger B, Sahay A (2016) Modulating Neuronal Competition Dynamics in the Dentate Gyrus to Rejuvenate Aging Memory Circuits. Neuron 91: 1356-1373

Kleiderman S, Gutbier S, Ugur Tufekci K, Ortega F, Sá JV, Teixeira AP, Brito C, Glaab E, Berninger B, Alves PM, Leist M (2016) Conversion of Nonproliferating Astrocytes into Neurogenic Neural Stem Cells: Control by FGF2 and Interferon-?. Stem Cells 34: 2861-2874

Shone V, Oulion S, Casane D, Laurenti P, Graham A (2016) Mode of reduction in the number of pharyngeal segments within the sarcopterygians. Zoological Lett 2: 6

Poopalasundaram S, Chambers D, Graham A, Bouloux PM (2016) Serotonin Receptor 1A (HTR1A), a Novel Regulator of GnRH Neuronal Migration in Chick Embryo. Endocrinology 157: 4632-4640

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Stiber JA, Wu JH, Zhang L, Nepliouev I, Zhang ZS, Bryson VG, Brian L, Bentley RC, Gordon-Weeks PR, Rosenberg PB, Freedman NJ (2016) The Actin-Binding Protein Drebrin Inhibits Neointimal Hyperplasia. Arterioscler Thromb Vasc Biol 36: 984-93

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