Publications

2013

Yap K, Makeyev EV (2013) Regulation of gene expression in mammalian nervous system through alternative pre-mRNA splicing coupled with RNA quality control mechanisms. Mol Cell Neurosci 56: 420-8
Jego S, Glasgow SD, Herrera CG, Ekstrand M, Reed SJ, Boyce R, Friedman J, Burdakov D, Adamantidis AR (2013) Optogenetic identification of a rapid eye movement sleep modulatory circuit in the hypothalamus. Nat Neurosci 16: 1637-43
Sterratt DC, Lyngholm D, Willshaw DJ, Thompson ID (2013) Standard anatomical and visual space for the mouse retina: computational reconstruction and transformation of flattened retinae with the Retistruct package. PLoS Comput Biol 9: e1002921
Villar-Cerviño V, Molano-Mazón M, Catchpole T, Valdeolmillos M, Henkemeyer M, Martínez LM, Borrell V, Marín O (2013) Contact repulsion controls the dispersion and final distribution of Cajal-Retzius cells. Neuron 77: 457-71
Ciceri G, Dehorter N, Sols I, Huang ZJ, Maravall M, Marín O (2013) Lineage-specific laminar organization of cortical GABAergic interneurons. Nat Neurosci 16: 1199-210
Del Pino I, García-Frigola C, Dehorter N, Brotons-Mas JR, Alvarez-Salvado E, Martínez de Lagrán M, Ciceri G, Gabaldón MV, Moratal D, Dierssen M, Canals S, Marín O, Rico B (2013) Erbb4 deletion from fast-spiking interneurons causes schizophrenia-like phenotypes. Neuron 79: 1152-68

Hay DB, Williams D, Stahl D, Wingate RJ (2013) Using Drawings of the Brain Cell to Exhibit Expertise in Neuroscience: Exploring the Boundaries of Experimental Culture Science Education 93 (3): 468-491
Lleras-Forero L, Tambalo M, Christophorou N, Chambers D, Houart C, Streit A (2013) Neuropeptides: developmental signals in placode progenitor formation. Dev Cell 26: 195-203
Robertshaw E, Matsumoto K, Lumsden A, Kiecker C (2013) Irx3 and Pax6 establish differential competence for Shh-mediated induction of GABAergic and glutamatergic neurons of the thalamus. Proc Natl Acad Sci U S A 110: E3919-26
Antinucci P, Nikolaou N, Meyer MP, Hindges R (2013) Teneurin-3 specifies morphological and functional connectivity of retinal ganglion cells in the vertebrate visual system. Cell Rep 5: 582-92
Levy P, Larsen C (2013) Odd-skipped labels a group of distinct neurons associated with the mushroom body and optic lobe in the adult Drosophila brain. J Comp Neurol 521: 3716-40
Povellato G,Tuxworth RI, Hanger DP,Tear G (2013) Modification of the Drosophila model of in vivo Tau toxicity reveals protective phosphorylation by GSK3β Biology Open Nov 28: bio.201366
van den Brink DM, Banerji O, Tear G (2013) Commissureless regulation of axon outgrowth across the midline is independent of Rab function. PLoS One 8: e64427
Bates TJ, Vonica A, Heasman J, Brivanlou AH, Bell E (2013) Coco regulates dorsoventral specification of germ layers via inhibition of TGF? signalling. Development 140: 4177-4181
Basson MA and Wingate RJ (2013) Congenital hypoplasia of the cerebellum: developmental causes and behavioural consequences.
Hunter PR, Lowe AS, Thompson ID, Meyer MP (2013) Emergent properties of the optic tectum revealed by population analysis of direction and orientation selectivity. J Neurosci 33: 13940-5
Lowe AS, Nikolaou N, Hunter PR, Thompson ID, Meyer MP (2013) A Systems-Based Dissection of Retinal Inputs to the Zebrafish Tectum Reveals Different Rules for Different Functional Classes during Development. J Neurosci 33: 13946-56
Worth DC, Daly CN, Geraldo S, Oozeer F, Gordon-Weeks PR (2013) Drebrin contains a cryptic F-actin-bundling activity regulated by Cdk5 phosphorylation. J Cell Biol 202: 793-806
Thomas-Jinu S, Houart C (2013) Dynamic expression of neurexophilin1 during zebrafish embryonic development. Gene Expr Patterns 13: 395-401
Gilthorpe JD, Oozeer F, Nash J, Calvo M, Bennett DLH, Lumsden A, Pini A (2013) Extracellular histone H1 is neurotoxic and drives a pro-inflammatory response in microglia F1000Research 2:148
Otsuka-Tanaka Y, Oommen S, Kawasaki M, Kawasaki K, Imam N, Jalani-Ghazani F, Hindges R, Sharpe PT, Ohazama A (2013) Oral lining mucosa development depends on mesenchymal microRNAs. J Dent Res 92: 229-34
Maiorano NA, Hindges R (2013) Restricted perinatal retinal degeneration induces retina reshaping and correlated structural rearrangement of the retinotopic map. Nat Commun 4: 1938
Sousa-Nunes R, Somers WG (2013) Mechanisms of asymmetric progenitor divisions in the Drosophila central nervous system. Adv Exp Med Biol 786: 79-102
Graham A, Shimeld SM (2013) The origin and evolution of the ectodermal placodes. J Anat 222: 32-40
Hu Y, Poopalasundaram S, Graham A, Bouloux PM (2013) GnRH neuronal migration and olfactory bulb neurite outgrowth are dependent on FGF receptor 1 signaling, specifically via the PI3K p110? isoform in chick embryo. Endocrinology 154: 388-99
Butts T, Graham A (2013) Old before their time: the ancient origins of the neural crest. Pigment Cell Melanoma Res 26: 287-89
Evans MD, Sammons RP, Lebron S, Dumitrescu AS, Watkins TB, Uebele VN, Renger JJ, Grubb MS (2013) Calcineurin signaling mediates activity-dependent relocation of the axon initial segment. J Neurosci 33: 6950-63
Girdler GC, Araya C, Ren X, Clarke JD (2013) Developmental time rather than local environment regulates the schedule of epithelial polarization in the zebrafish neural rod. Neural Dev 8: 5
Walker AS, Burrone J, Meyer MP (2013) Functional imaging in the zebrafish retinotectal system using RGECO. Front Neural Circuits 7: 34

2012

Robertshaw E, Kiecker C (2012) Phylogenetic origins of brain organisers. Scientifica (Cairo) 2012: 475017
Heinrich C, Götz M, Berninger B (2012) Reprogramming of postnatal astroglia of the mouse neocortex into functional, synapse-forming neurons. Methods Mol Biol 814: 485-98
Mu L, Berti L, Masserdotti G, Covic M, Michaelidis TM, Doberauer K, Merz K, Rehfeld F, Haslinger A, Wegner M, Sock E, Lefebvre V, Couillard-Despres S, Aigner L, Berninger B, Lie DC (2012) SoxC transcription factors are required for neuronal differentiation in adult hippocampal neurogenesis. J Neurosci 32: 3067-80
Chen X, Lepier A, Berninger B, Tolkovsky AM, Herbert J (2012) Cultured subventricular zone progenitor cells transduced with neurogenin-2 become mature glutamatergic neurons and integrate into the dentate gyrus. PLoS One 7: e31547
Karow M, Sánchez R, Schichor C, Masserdotti G, Ortega F, Heinrich C, Gascón S, Khan MA, Lie DC, Dellavalle A, Cossu G, Goldbrunner R, Götz M, Berninger B (2012) Reprogramming of pericyte-derived cells of the adult human brain into induced neuronal cells. Cell Stem Cell 11: 471-6
Danesin C, Houart C (2012) A Fox stops the Wnt: implications for forebrain development and diseases. Curr Opin Genet Dev 22: 323-30
Bielen H, Houart C (2012) BMP signaling protects telencephalic fate by repressing eye identity and its Cxcr4-dependent morphogenesis. Dev Cell 23: 812-22
Khan AG, Sarangi M, Bhalla US (2012) Rats track odour trails accurately using a multi-layered strategy with near-optimal sampling. Nat Commun 3: 703
Loncle N, Williams DW (2012) An interaction screen identifies headcase as a regulator of large-scale pruning. J Neurosci 32: 17086-96
Marín O (2012) Interneuron dysfunction in psychiatric disorders. Nat Rev Neurosci 13: 107-20

Ahmed AI, Shtaya AB, Zaben MJ, Owens EV, Kiecker C, Gray WP (2012) Endogenous GFAP-positive neural stem/progenitor cells in the postnatal mouse cortex are activated following traumatic brain injury. J Neurotrauma 29: 828-42
Dai W, Zhang G, Makeyev EV (2012) RNA-binding protein HuR autoregulates its expression by promoting alternative polyadenylation site usage. Nucleic Acids Res 40: 787-800
Juvvuna PK, Khandelia P, Lee LM, Makeyev EV (2012) Argonaute identity defines the length of mature mammalian microRNAs. Nucleic Acids Res 40: 6808-20
Campion C, Gilthorpe J, Gogoi R, and Pini A (2012) Sulfated oligosaccharides for use in treatment of neurodegenerative diseases Published patent WO 2012160337

Yap K, Lim ZQ, Khandelia P, Friedman B, Makeyev EV (2012) Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention. Genes Dev 26: 1209-23
Borrell V, Cárdenas A, Ciceri G, Galcerán J, Flames N, Pla R, Nóbrega-Pereira S, García-Frigola C, Peregrín S, Zhao Z, Ma L, Tessier-Lavigne M, Marín O (2012) Slit/Robo signaling modulates the proliferation of central nervous system progenitors. Neuron 76: 338-52
Writer MJ, Kyrtatos PG, Bienemann AS, Pugh JA, Lowe AS, Villegas-Llerena C, Kenny GD, White EA, Gill SS, McLeod CW, Lythgoe MF, Hart SL (2012) Lipid peptide nanocomplexes for gene delivery and magnetic resonance imaging in the brain. J Control Release 162: 340-8
Hutson TH, Foster E, Dawes JM, Hindges R, Yáñez-Muñoz RJ, Moon LD (2012) Lentiviral vectors encoding short hairpin RNAs efficiently transduce and knockdown LINGO-1 but induce an interferon response and cytotoxicity in central nervous system neurones. J Gene Med 14: 299-315
Oommen S, Otsuka-Tanaka Y, Imam N, Kawasaki M, Kawasaki K, Jalani-Ghazani F, Anderegg A, Awatramani R, Hindges R, Sharpe PT, Ohazama A (2012) Distinct roles of microRNAs in epithelium and mesenchyme during tooth development. Dev Dyn 241: 1465-72
Ertürk A, Mauch CP, Hellal F, Förstner F, Keck T, Becker K, Jährling N, Steffens H, Richter M, Hübener M, Kramer E, Kirchhoff F, Dodt HU, Bradke F (2012) Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury. Nat Med 18: 166-71
Graham A, Richardson J (2012) Developmental and evolutionary origins of the pharyngeal apparatus. Evodevo 3: 24
Ferrario JE, Baskaran P, Clark C, Hendry A, Lerner O, Hintze M, Allen J, Chilton JK, Guthrie S (2012) Axon guidance in the developing ocular motor system and Duane retraction syndrome depends on Semaphorin signaling via alpha2-chimaerin. Proc Natl Acad Sci U S A 109: 14669-74
Schöne C, Cao ZF, Apergis-Schoute J, Adamantidis A, Sakurai T, Burdakov D (2012) Optogenetic probing of fast glutamatergic transmission from hypocretin/orexin to histamine neurons in situ. J Neurosci 32: 12437-43
Butts T, Wilson L and Wingate RJ (2012) Specification of granule cells and Purkinje cells. in M. Manto D. Gruol N. Schmahmann N. Koibuchi and F. Rossi (eds.) Handbook of the Cerebellum and Cerebellar Disorders. Heidelberg: Springer Science and Business Media.
Broom ER, Gilthorpe JD, Butts T, Campo-Paysaa F, Wingate RJ (2012) The roof plate boundary is a bi-directional organiser of dorsal neural tube and choroid plexus development. Development 139: 4261-70
Folgueira M, Bayley P, Navratilova P, Becker TS, Wilson SW, Clarke JD (2012) Morphogenesis underlying the development of the everted teleost telencephalon. Neural Dev 7: 32
Buckley CE, Ren X, Ward LC, Girdler GC, Araya C, Green MJ, Clark BS, Link BA, Clarke JD (2012) Mirror-symmetric microtubule assembly and cell interactions drive lumen formation in the zebrafish neural rod. EMBO J
Nikolaou N, Lowe AS, Walker AS, Abbas F, Hunter PR, Thompson ID, Meyer MP (2012) Parametric functional maps of visual inputs to the tectum. Neuron 76: 317-324
Delogu A, Sellers K, Zagoraiou L, Bocianowska-Zbrog A, Mandal S, Guimera J, Rubenstein JL, Sugden D, Jessell T, Lumsden A (2012) Subcortical Visual Shell Nuclei Targeted by ipRGCs Develop from a Sox14+-GABAergic Progenitor and Require Sox14 to Regulate Daily Activity Rhythms. Neuron 75: 648-62
Kiecker C, Lumsden A (2012) The Role of Organizers in Patterning the Nervous System. Annu Rev Neurosci
Andreae LC, Fredj NB, Burrone J (2012) Independent vesicle pools underlie different modes of release during neuronal development. J Neurosci 32: 1867-74
Maiorano NA, Hindges R (2012) Non-Coding RNAs in Retinal Development. Int J Mol Sci 13: 558-78
Dun XP, Bandeira de Lima T, Allen J, Geraldo S, Gordon-Weeks P, Chilton JK (2012) Drebrin controls neuronal migration through the formation and alignment of the leading process. Mol Cell Neurosci 49: 341-350
Santos R, Wu J, Hamilton JA, Pinter R, Hindges R, Calof AL (2012) Restoration of retinal development in vsx2 deficient mice by reduction of gdf11 levels. Adv Exp Med Biol 723: 671-7
Cavodeassi F, Houart C (2012) Brain regionalization: of signaling centers and boundaries. Dev Neurobiol 72: 218-33
Nikolaou N, Meyer MP (2012) Imaging circuit formation in zebrafish. Dev Neurobiol 72: 346-57

2011

Heinrich C, Gascón S, Masserdotti G, Lepier A, Sanchez R, Simon-Ebert T, Schroeder T, Götz M, Berninger B (2011) Generation of subtype-specific neurons from postnatal astroglia of the mouse cerebral cortex. Nat Protoc 6: 214-28
Blum R, Heinrich C, Sánchez R, Lepier A, Gundelfinger ED, Berninger B, Götz M (2011) Neuronal network formation from reprogrammed early postnatal rat cortical glial cells. Cereb Cortex 21: 413-24
Costa MR, Ortega F, Brill MS, Beckervordersandforth R, Petrone C, Schroeder T, Götz M, Berninger B (2011) Continuous live imaging of adult neural stem cell division and lineage progression in vitro. Development 138: 1057-68
Egea V, von Baumgarten L, Schichor C, Berninger B, Popp T, Neth P, Goldbrunner R, Kienast Y, Winkler F, Jochum M, Ries C (2011) TNF-? respecifies human mesenchymal stem cells to a neural fate and promotes migration toward experimental glioma. Cell Death Differ 18: 853-63
Ortega F, Costa MR, Simon-Ebert T, Schroeder T, Götz M, Berninger B (2011) Using an adherent cell culture of the mouse subependymal zone to study the behavior of adult neural stem cells on a single-cell level. Nat Protoc 6: 1847-59
Khandelia P, Yap K, Makeyev EV (2011) Streamlined platform for short hairpin RNA interference and transgenesis in cultured mammalian cells. Proc Natl Acad Sci U S A 108: 12799-804
Karnani MM, Apergis-Schoute J, Adamantidis A, Jensen LT, de Lecea L, Fugger L, Burdakov D (2011) Activation of central orexin/hypocretin neurons by dietary amino acids. Neuron 72: 616-29
Sousa-Nunes R, Yee LL, Gould AP (2011) Fat cells reactivate quiescent neuroblasts via TOR and glial insulin relays in Drosophila. Nature 471: 508-12
Sekar S, Verhoye M, Van Audekerke J, Vanhoutte G, Lowe AS, Blamire AM, Steckler T, Van der Linden A, Shoaib M (2011) Neuroadaptive responses to citalopram in rats using pharmacological magnetic resonance imaging. Psychopharmacology (Berl) 213: 521-31
Sekar S, Van Audekerke J, Vanhoutte G, Lowe AS, Blamire AM, Van der Linden A, Steckler T, Shoaib M, Verhoye M (2011) Neuroanatomical targets of reboxetine and bupropion as revealed by pharmacological magnetic resonance imaging. Psychopharmacology (Berl) 217: 549-57
Tuxworth RI, Chen H, Vivancos V, Carvajal N, Huang X, Tear G (2011) The Batten disease gene CLN3 is required for the response to oxidative stress. Hum Mol Genet 20: 2037-47
Brierley D, Rathore K, Vijayraghavan K, Williams D (2011) Developmental origins and architecture of Drosophila leg motoneurons. J Comp Neurol
Farley EK, Gale E, Chambers D, Li M (2011) Effects of in ovo electroporation on endogenous gene expression: genome-wide analysis. Neural Dev 6: 17
Gennet N, Gale E, Nan X, Farley E, Takacs K, Oberwallner B, Chambers D, Li M (2011) Doublesex and mab-3-related transcription factor 5 promotes midbrain dopaminergic identity in pluripotent stem cells by enforcing a ventral-medial progenitor fate. Proc Natl Acad Sci U S A 108: 9131-6
Keck T, Scheuss V, Jacobsen RI, Wierenga CJ, Eysel UT, Bonhoeffer T, Hübener M (2011) Loss of sensory input causes rapid structural changes of inhibitory neurons in adult mouse visual cortex. Neuron 71: 869-82
Calamita P, Fanto M (2011) Slimming down fat makes neuropathic hippo: the Fat/Hippo tumor suppressor pathway protects adult neurons through regulation of autophagy. Autophagy 7: 907-9
Volpi V, Mackay D, Fanto M (2011) Single Drosophila ommatidium dissection and imaging. J Vis Exp
Tymanskyj SR, Scales TM, Gordon-Weeks PR (2011) MAP1B enhances microtubule assembly rates and axon extension rates in developing neurons. Mol Cell Neurosci
Tossell K, Andreae LC, Cudmore C, Lang E, Muthukrishnan U, Lumsden A, Gilthorpe JD, Irving C (2011) Lrrn1 is required for formation of the midbrain-hindbrain boundary and organiser through regulation of affinity differences between midbrain and hindbrain cells in chick. Dev Biol 352: 341-52
Napoletano F, Occhi S, Calamita P, Volpi V, Blanc E, Charroux B, Royet J, Fanto M (2011) Polyglutamine Atrophin provokes neurodegeneration in Drosophila by repressing fat. EMBO J 30: 945-58