Publications

2016

Kiecker C, Bates T, Bell E (2016) Molecular specification of germ layers in vertebrate embryos. Cell Mol Life Sci
Antinucci P, Suleyman O, Monfries C, Hindges R (2016) Neural Mechanisms Generating Orientation Selectivity in the Retina. Curr Biol

Yap K, Xiao Y, Friedman BA, Je HS, Makeyev EV (2016) Polarizing the Neuron through Sustained Co-expression of Alternatively Spliced Isoforms. Cell Rep
Panousopoulou E, Hobbs C, Mason I, Green JB, Formstone CJ (2016) Epiboly generates the epidermal basal monolayer and spreads the nascent mammalian skin to enclose the embryonic body. J Cell Sci

Qian X, Hamid FM, El Sahili A, Darwis DA, Wong YH, Bhushan S, Makeyev EV, Lescar J (2016) Functional Evolution in Orthologous Cell-encoded RNA-dependent RNA Polymerases. J Biol Chem
Spires-Jones TL, Poirazi P, Grubb MS (2016) Opening up: open access publishing, data sharing, and how they can influence your neuroscience career. Eur J Neurosci
Araya C, Carmona-Fontaine C, Clarke JD (2016) Extracellular matrix couples the convergence movements of mesoderm and neural plate during the early stages of neurulation. Dev Dyn
Leto K, Arancillo M, Becker EB, Buffo A, Chiang C, Ding B, Dobyns WB, Dusart I, Haldipur P, Hatten ME, Hoshino M, Joyner AL, Kano M, Kilpatrick DL, Koibuchi N, Marino S, Martinez S, Millen KJ, Millner TO, Miyata T, Parmigiani E, Schilling K, Sekerková G, Sillitoe RV, Sotelo C, Uesaka N, Wefers A, Wingate RJ, Hawkes R (2016) Consensus Paper: Cerebellar Development. Cerebellum
Delbaere J, Van Herck SL, Bourgeois NM, Vancamp P, Yang S, Wingate RJ, Darras VM (2016) Mosaic Expression of Thyroid Hormone Regulatory Genes Defines Cell Type-Specific Dependency in the Developing Chicken Cerebellum. Cerebellum

Leiwe MN, Hendry AC, Bard AD, Eglen SJ, Lowe AS, Thompson ID (2016) Geniculo-Cortical Projection Diversity Revealed within the Mouse Visual Thalamus. PLoS One
Cate MS, Gajendra S, Alsbury S, Raabe T, Tear G, Mitchell KJ (2016) Mushroom body defect is required in parallel to Netrin for midline axon guidance in Drosophila. Development
Kawaguchi D, Sahara S, Zembrzycki A, O'Leary DDM (2016) Generation and analysis of an improved Foxg1-IRES-Cre driver mouse line. Dev Biol

Shepherd D, Harris R, Williams DW, Truman JW (2016) Postembryonic lineages of the Drosophila ventral nervous system: Neuroglian expression reveals the adult hemilineage associated fiber tracts in the adult thoracic neuromeres. J Comp Neurol
Buckley CE, Moore RE, Reade A, Goldberg AR, Weiner OD, Clarke JD (2016) Reversible Optogenetic Control of Subcellular Protein Localization in a Live Vertebrate Embryo. Dev Cell

2015

Kostadinov D, Sanes JR (2015) Protocadherin-dependent dendritic self-avoidance regulates neural connectivity and circuit function. Elife
Kiecker C (2015) WNT Takes Centre Stage in Border Control. EBioMedicine
Bergami M, Masserdotti G, Temprana SG, Motori E, Eriksson TM, Göbel J, Yang SM, Conzelmann KK, Schinder AF, Götz M, Berninger B (2015) A critical period for experience-dependent remodeling of adult-born neuron connectivity. Neuron
Raposo AA, Vasconcelos FF, Drechsel D, Marie C, Johnston C, Dolle D, Bithell A, Gillotin S, van den Berg DL, Ettwiller L, Flicek P, Crawford GE, Parras CM, Berninger B, Buckley NJ, Guillemot F, Castro DS (2015) Ascl1 Coordinately Regulates Gene Expression and the Chromatin Landscape during Neurogenesis. Cell Rep
Masserdotti G, Gillotin S, Sutor B, Drechsel D, Irmler M, Jørgensen HF, Sass S, Theis FJ, Beckers J, Berninger B, Guillemot F, Götz M (2015) Transcriptional Mechanisms of Proneural Factors and REST in Regulating Neuronal Reprogramming of Astrocytes. Cell Stem Cell
Sahu SK, Garding A, Tiwari N, Thakurela S, Toedling J, Gebhard S, Ortega F, Schmarowski N, Berninger B, Nitsch R, Schmidt M, Tiwari VK (2015) JNK-dependent gene regulatory circuitry governs mesenchymal fate. EMBO J
Aravantinou-Fatorou K, Ortega F, Chroni-Tzartou D, Antoniou N, Poulopoulou C, Politis PK, Berninger B, Matsas R, Thomaidou D (2015) CEND1 and NEUROGENIN2 Reprogram Mouse Astrocytes and Embryonic Fibroblasts to Induced Neural Precursors and Differentiated Neurons. Stem Cell Reports
Heinrich C, Spagnoli FM, Berninger B (2015) In vivo reprogramming for tissue repair. Nat Cell Biol
Péron S, Berninger B (2015) Imported Stem Cells Strike against Stroke. Cell Stem Cell
Chen G, Wernig M, Berninger B, Nakafuku M, Parmar M, Zhang CL (2015) In Vivo Reprogramming for Brain and Spinal Cord Repair. eNeuro
Anderson GW, Deans PJ, Taylor RD, Raval P, Chen D, Lowder H, Murkerji S, Andreae LC, Williams BP, Srivastava DP (2015) Characterisation of neurons derived from a cortical human neural stem cell line CTX0E16. Stem Cell Res Ther
Poort J, Khan AG, Pachitariu M, Nemri A, Orsolic I, Krupic J, Bauza M, Sahani M, Keller GB, Mrsic-Flogel TD, Hofer SB (2015) Learning Enhances Sensory and Multiple Non-sensory Representations in Primary Visual Cortex. Neuron

Hannon E, Chand AN, Evans MD, Wong CC, Grubb MS, Mill J (2015) A role for CaV1 and calcineurin signaling in depolarization-induced changes in neuronal DNA methylation. Neuroepigenetics
Mockenhaupt S, Makeyev EV (2015) Non-coding functions of alternative pre-mRNA splicing in development. Semin Cell Dev Biol
Nikolaou N, Meyer MP (2015) Neurobiology: imaging prey capture circuits in zebrafish. Curr Biol
Hanzel M, Wingate RJ, Butts T (2015) Ex Vivo Culture of Chick Cerebellar Slices and Spatially Targeted Electroporation of Granule Cell Precursors. J Vis Exp

Zembrzycki A, Stocker AM, Leingärtner A, Sahara S, Chou SJ, Kalatsky V, May SR, Stryker MP, O'Leary DD (2015) Genetic mechanisms control the linear scaling between related cortical primary and higher order sensory areas. Elife

An W, Jackson RE, Hunter P, Gögel S, van Diepen M, Liu K, Meyer MP, Eickholt BJ (2015) Engineering FKBP-Based Destabilizing Domains to Build Sophisticated Protein Regulation Systems. PLoS One
Wasserman SM, Aptekar JW, Lu P, Nguyen J, Wang AL, Keles MF, Grygoruk A, Krantz DE, Larsen C, Frye MA (2015) Olfactory neuromodulation of motion vision circuitry in Drosophila. Curr Biol
Slater G, Levy P, Chan KL, Larsen C (2015) A central neural pathway controlling odor tracking in Drosophila. J Neurosci
Nikolaou N, Meyer MP (2015) Lamination Speeds the Functional Development of Visual Circuits. Neuron
Loncle N, Agromayor M, Martin-Serrano J, Williams DW (2015) An ESCRT module is required for neuron pruning. Sci Rep
Wefelmeyer W, Cattaert D, Burrone J (2015) Activity-dependent mismatch between axo-axonic synapses and the axon initial segment controls neuronal output. Proc Natl Acad Sci U S A
Patel AX, Burdakov D (2015) Mechanisms of gain control by voltage-gated channels in intrinsically-firing neurons. PLoS One
Dai W, Li W, Hoque M, Li Z, Tian B, Makeyev EV (2015) A post-transcriptional mechanism pacing expression of neural genes with precursor cell differentiation status. Nat Commun
Apergis-Schoute J, Iordanidou P, Faure C, Jego S, Schöne C, Aitta-Aho T, Adamantidis A, Burdakov D (2015) Optogenetic evidence for inhibitory signaling from orexin to MCH neurons via local microcircuits. J Neurosci
Chand AN, Galliano E, Chesters RA, Grubb MS (2015) A distinct subtype of dopaminergic interneuron displays inverted structural plasticity at the axon initial segment. J Neurosci
Tyson AL, Hilton ST, Andreae LC (2015) Rapid, simple and inexpensive production of custom 3D printed equipment for large-volume fluorescence microscopy. Int J Pharm
Missaire M, Hindges R (2015) The role of cell adhesion molecules in visual circuit formation: from neurite outgrowth to maps and synaptic specificity. Dev Neurobiol
Hunter PR, Hendry AC, Lowe AS (2015) Zebrafish brain mapping--standardized spaces, length scales, and the power of N and n. Dev Neurobiol
Evans MD, Dumitrescu AS, Kruijssen DL, Taylor SE, Grubb MS (2015) Rapid Modulation of Axon Initial Segment Length Influences Repetitive Spike Firing. Cell Rep
Andreae LC, Burrone J (2015) Spontaneous Neurotransmitter Release Shapes Dendritic Arbors via Long-Range Activation of NMDA Receptors. Cell Rep

Entchev EV, Patel DS, Zhan M, Steele AJ, Lu H, Ch'ng Q (2015) A gene-expression-based neural code for food abundance that modulates lifespan. Elife
Dehorter N, Ciceri G, Bartolini G, Lim L, del Pino I, Marín O (2015) Tuning of fast-spiking interneuron properties by an activity-dependent transcriptional switch. Science

Sonego M, Oberoi M, Stoddart J, Gajendra S, Hendricusdottir R, Oozeer F, Worth DC, Hobbs C, Eickholt BJ, Gordon-Weeks PR, Doherty P, Lalli G (2015) Drebrin regulates neuroblast migration in the postnatal Mammalian brain. PLoS One

2014

Irimia M, Weatheritt RJ, Ellis JD, Parikshak NN, Gonatopoulos-Pournatzis T, Babor M, Quesnel-Vallières M, Tapial J, Raj B, O'Hanlon D, Barrios-Rodiles M, Sternberg MJ, Cordes SP, Roth FP, Wrana JL, Geschwind DH, Blencowe BJ (2014) A highly conserved program of neuronal microexons is misregulated in autistic brains. Cell
Nelson AC, Cutty SJ, Niini M, Stemple DL, Flicek P, Houart C, Bruce AE, Wardle FC (2014) Global identification of Smad2 and Eomesodermin targets in zebrafish identifies a conserved transcriptional network in mesendoderm and a novel role for Eomesodermin in repression of ectodermal gene expression. BMC Biol
Long KR, Ffrench-Constant C (2014) Neural stem cell quiescence comes to an un-sticky end. Nat Cell Biol
Arlotta P, Berninger B (2014) Brains in metamorphosis: reprogramming cell identity within the central nervous system. Curr Opin Neurobiol
Karow M, Schichor C, Beckervordersandforth R, Berninger B (2014) Lineage-reprogramming of pericyte-derived cells of the adult human brain into induced neurons. J Vis Exp
Heinrich C, Bergami M, Gascón S, Lepier A, Viganò F, Dimou L, Sutor B, Berninger B, Götz M (2014) Sox2-mediated conversion of NG2 glia into induced neurons in the injured adult cerebral cortex. Stem Cell Reports
Andreae LC, Burrone J (2014) The role of neuronal activity and transmitter release on synapse formation. Curr Opin Neurobiol
Buckley C, Clarke J (2014) Establishing the plane of symmetry for lumen formation and bilateral brain formation in the zebrafish neural rod. Semin Cell Dev Biol
Zakaria S, Mao Y, Kuta A, de Sousa CF, Gaufo GO, McNeill H, Hindges R, Guthrie S, Irvine KD, Francis-West PH (2014) Regulation of neuronal migration by Dchs1-Fat4 planar cell polarity. Curr Biol
Astick M, Tubby K, Mubarak WM, Guthrie S, Price SR (2014) Central topography of cranial motor nuclei controlled by differential cadherin expression. Curr Biol
Neo WH, Yap K, Lee SH, Looi LS, Khandelia P, Neo SX, Makeyev EV, Su IH (2014) MicroRNA miR-124 controls the choice between neuronal and astrocyte differentiation by fine-tuning Ezh2 expression. J Biol Chem
Jain N, Lim LW, Tan WT, George B, Makeyev E, Thanabalu T (2014) Conditional N-WASP knockout in mouse brain implicates actin cytoskeleton regulation in hydrocephalus pathology. Exp Neurol
Abbas F, Meyer MP (2014) Fish vision: size selectivity in the zebrafish retinotectal pathway. Curr Biol
Kosse C, Burdakov D (2014) A unifying computational framework for stability and flexibility of arousal. Front Syst Neurosci
Marklund U, Alekseenko Z, Andersson E, Falci S, Westgren M, Perlmann T, Graham A, Sundström E, Ericson J (2014) Detailed expression analysis of regulatory genes in the early developing human neural tube. Stem Cells Dev
Dyer C, Linker C, Graham A, Knight R (2014) Specification of sensory neurons occurs through diverse developmental programs functioning in the brain and spinal cord. Dev Dyn
Aigner S, Heckel T, Zhang JD, Andreae LC, Jagasia R (2014) Human pluripotent stem cell models of autism spectrum disorder: emerging frontiers, opportunities, and challenges towards neuronal networks in a dish. Psychopharmacology (Berl)
Hamid FM, Makeyev EV (2014) Regulation of mRNA abundance by polypyrimidine tract-binding protein-controlled alternate 5' splice site choice. PLoS Genet
Tripathi VB, Baskaran P, Shaw CE, Guthrie S (2014) Tar DNA-binding protein-43 (TDP-43) regulates axon growth in vitro and in vivo. Neurobiol Dis
Araya C, Tawk M, Girdler GC, Costa M, Carmona-Fontaine C, Clarke JD (2014) Mesoderm is required for coordinated cell movements within zebrafish neural plate in vivo. Neural Dev
Shone V, Graham A (2014) Endodermal/ectodermal interfaces during pharyngeal segmentation in vertebrates. J Anat
Graham A, Butts T, Lumsden A, Kiecker C (2014) What can vertebrates tell us about segmentation? Evodevo
Schöne C, Apergis-Schoute J, Sakurai T, Adamantidis A, Burdakov D (2014) Coreleased orexin and glutamate evoke nonredundant spike outputs and computations in histamine neurons. Cell Rep
Povellato G, Tuxworth RI, Hanger DP, Tear G (2014) Modification of the Drosophila model of in vivo Tau toxicity reveals protective phosphorylation by GSK3b. Biol Open
Hamid FM, Makeyev EV (2014) Emerging functions of alternative splicing coupled with nonsense-mediated decay. Biochem Soc Trans
Butts T, Green MJ, Wingate RJ (2014) Development of the cerebellum: simple steps to make a 'little brain'. Development
Butts T, Modrell MS, Baker CV, Wingate RJ (2014) The evolution of the vertebrate cerebellum: absence of a proliferative external granule layer in a non-teleost ray-finned fish. Evol Dev
Butts T, Hanzel M, Wingate RJ (2014) Transit amplification in the amniote cerebellum evolved via a heterochronic shift in NeuroD1 expression. Development
Green MJ, Wingate RJ (2014) Developmental origins of diversity in cerebellar output nuclei. Neural Dev
Bryson JB, Machado CB, Crossley M, Stevenson D, Bros-Facer V, Burrone J, Greensmith L, Lieberam I (2014) Optical control of muscle function by transplantation of stem cell-derived motor neurons in mice. Science
Marler KJ, Suetterlin P, Dopplapudi A, Rubikaite A, Adnan J, Maiorano NA, Lowe AS, Thompson ID, Pathania M, Bordey A, Fulga T, Van Vactor DL, Hindges R, Drescher U (2014) BDNF promotes axon branching of retinal ganglion cells via miRNA-132 and p250GAP. J Neurosci

Suetterlin P, Drescher U (2014) Target-independent ephrina/EphA-mediated axon-axon repulsion as a novel element in retinocollicular mapping. Neuron

Pereira Dias G, Hollywood R, Bevilaqua MC, da Luz AC, Hindges R, Nardi AE, Thuret S (2014) Consequences of cancer treatments on adult hippocampal neurogenesis: implications for cognitive function and depressive symptoms. Neuro Oncol
Green MJ, Myat AM, Emmenegger BA, Wechsler-Reya RJ, Wilson LJ, Wingate RJ (2014) Independently specified Atoh1 domains define novel developmental compartments in rhombomere 1. Development

2013

Gilthorpe JD, Oozeer F, Nash J, Calvo M, Bennett DL, Lumsden A, Pini A (2013) Extracellular histone H1 is neurotoxic and drives a pro-inflammatory response in microglia. F1000Res
Motori E, Puyal J, Toni N, Ghanem A, Angeloni C, Malaguti M, Cantelli-Forti G, Berninger B, Conzelmann KK, Götz M, Winklhofer KF, Hrelia S, Bergami M (2013) Inflammation-induced alteration of astrocyte mitochondrial dynamics requires autophagy for mitochondrial network maintenance. Cell Metab
Deshpande A, Bergami M, Ghanem A, Conzelmann KK, Lepier A, Götz M, Berninger B (2013) Retrograde monosynaptic tracing reveals the temporal evolution of inputs onto new neurons in the adult dentate gyrus and olfactory bulb. Proc Natl Acad Sci U S A
Ortega F, Gascón S, Masserdotti G, Deshpande A, Simon C, Fischer J, Dimou L, Chichung Lie D, Schroeder T, Berninger B (2013) Oligodendrogliogenic and neurogenic adult subependymal zone neural stem cells constitute distinct lineages and exhibit differential responsiveness to Wnt signalling. Nat Cell Biol
Sylvester JB, Rich CA, Yi C, Peres JN, Houart C, Streelman JT (2013) Competing signals drive telencephalon diversity. Nat Commun
Basson MA, Wingate RJ (2013) Congenital hypoplasia of the cerebellum: developmental causes and behavioral consequences. Front Neuroanat
Wanner SJ, Saeger I, Guthrie S, Prince VE (2013) Facial motor neuron migration advances. Curr Opin Neurobiol
Clark C, Austen O, Poparic I, Guthrie S (2013) Alpha2-Chimaerin regulates a key axon guidance transition during development of the oculomotor projection. J Neurosci
Yap K, Makeyev EV (2013) Regulation of gene expression in mammalian nervous system through alternative pre-mRNA splicing coupled with RNA quality control mechanisms. Mol Cell Neurosci
Jego S, Glasgow SD, Herrera CG, Ekstrand M, Reed SJ, Boyce R, Friedman J, Burdakov D, Adamantidis AR (2013) Optogenetic identification of a rapid eye movement sleep modulatory circuit in the hypothalamus. Nat Neurosci
Sterratt DC, Lyngholm D, Willshaw DJ, Thompson ID (2013) Standard anatomical and visual space for the mouse retina: computational reconstruction and transformation of flattened retinae with the Retistruct package. PLoS Comput Biol