Publications

2014

Jain N, Lim LW, Tan WT, George B, Makeyev E, Thanabalu T (2014) Conditional N-WASP knockout in mouse brain implicates actin cytoskeleton regulation in hydrocephalus pathology. Exp Neurol 254: 29-40
Abbas F, Meyer MP (2014) Fish vision: size selectivity in the zebrafish retinotectal pathway. Curr Biol 24: R1048-50
Kosse C, Burdakov D (2014) A unifying computational framework for stability and flexibility of arousal. Front Syst Neurosci 8: 192
Marklund U, Alekseenko Z, Andersson E, Falci S, Westgren M, Perlmann T, Graham A, Sundström E, Ericson J (2014) Detailed expression analysis of regulatory genes in the early developing human neural tube. Stem Cells Dev 23: 5-15
Dyer C, Linker C, Graham A, Knight R (2014) Specification of sensory neurons occurs through diverse developmental programs functioning in the brain and spinal cord. Dev Dyn 243: 1429-39
Aigner S, Heckel T, Zhang JD, Andreae LC, Jagasia R (2014) Human pluripotent stem cell models of autism spectrum disorder: emerging frontiers, opportunities, and challenges towards neuronal networks in a dish. Psychopharmacology (Berl) 231: 1089-104
Hamid FM, Makeyev EV (2014) Regulation of mRNA abundance by polypyrimidine tract-binding protein-controlled alternate 5' splice site choice. PLoS Genet 10: e1004771
Tripathi VB, Baskaran P, Shaw CE, Guthrie S (2014) Tar DNA-binding protein-43 (TDP-43) regulates axon growth in vitro and in vivo. Neurobiol Dis 65: 25-34
Araya C, Tawk M, Girdler GC, Costa M, Carmona-Fontaine C, Clarke JD (2014) Mesoderm is required for coordinated cell movements within zebrafish neural plate in vivo. Neural Dev 9: 9
Shone V, Graham A (2014) Endodermal/ectodermal interfaces during pharyngeal segmentation in vertebrates. J Anat 225: 479-91
Graham A, Butts T, Lumsden A, Kiecker C (2014) What can vertebrates tell us about segmentation? Evodevo 5: 24
Schöne C, Apergis-Schoute J, Sakurai T, Adamantidis A, Burdakov D (2014) Coreleased orexin and glutamate evoke nonredundant spike outputs and computations in histamine neurons. Cell Rep 7: 697-704
Povellato G, Tuxworth RI, Hanger DP, Tear G (2014) Modification of the Drosophila model of in vivo Tau toxicity reveals protective phosphorylation by GSK3b. Biol Open 3: 1-11
Hamid FM, Makeyev EV (2014) Emerging functions of alternative splicing coupled with nonsense-mediated decay. Biochem Soc Trans 42: 1168-73
Butts T, Green MJ, Wingate RJ (2014) Development of the cerebellum: simple steps to make a 'little brain'. Development 141: 4031-41
Butts T, Modrell MS, Baker CV, Wingate RJ (2014) The evolution of the vertebrate cerebellum: absence of a proliferative external granule layer in a non-teleost ray-finned fish. Evol Dev 16: 92-100
Butts T, Hanzel M, Wingate RJ (2014) Transit amplification in the amniote cerebellum evolved via a heterochronic shift in NeuroD1 expression. Development 141: 2791-5
Green MJ, Wingate RJ (2014) Developmental origins of diversity in cerebellar output nuclei. Neural Dev 9: 1
Bryson JB, Machado CB, Crossley M, Stevenson D, Bros-Facer V, Burrone J, Greensmith L, Lieberam I (2014) Optical control of muscle function by transplantation of stem cell-derived motor neurons in mice. Science 344: 94-7
Marler KJ, Suetterlin P, Dopplapudi A, Rubikaite A, Adnan J, Maiorano NA, Lowe AS, Thompson ID, Pathania M, Bordey A, Fulga T, Van Vactor DL, Hindges R, Drescher U (2014) BDNF promotes axon branching of retinal ganglion cells via miRNA-132 and p250GAP. J Neurosci 34: 969-79
Suetterlin P, Drescher U (2014) Target-independent ephrina/EphA-mediated axon-axon repulsion as a novel element in retinocollicular mapping. Neuron 84: 740-52
Pereira Dias G, Hollywood R, Bevilaqua MC, da Luz AC, Hindges R, Nardi AE, Thuret S (2014) Consequences of cancer treatments on adult hippocampal neurogenesis: implications for cognitive function and depressive symptoms. Neuro Oncol 16: 476-92
Green MJ, Myat AM, Emmenegger BA, Wechsler-Reya RJ, Wilson LJ, Wingate RJ (2014) Independently specified Atoh1 domains define novel developmental compartments in rhombomere 1. Development 141: 389-98

2013

Gilthorpe JD, Oozeer F, Nash J, Calvo M, Bennett DL, Lumsden A, Pini A (2013) Extracellular histone H1 is neurotoxic and drives a pro-inflammatory response in microglia. F1000Res 2: 148
Motori E, Puyal J, Toni N, Ghanem A, Angeloni C, Malaguti M, Cantelli-Forti G, Berninger B, Conzelmann KK, Götz M, Winklhofer KF, Hrelia S, Bergami M (2013) Inflammation-induced alteration of astrocyte mitochondrial dynamics requires autophagy for mitochondrial network maintenance. Cell Metab 18: 844-59
Deshpande A, Bergami M, Ghanem A, Conzelmann KK, Lepier A, Götz M, Berninger B (2013) Retrograde monosynaptic tracing reveals the temporal evolution of inputs onto new neurons in the adult dentate gyrus and olfactory bulb. Proc Natl Acad Sci U S A 110: E1152-61
Ortega F, Gascón S, Masserdotti G, Deshpande A, Simon C, Fischer J, Dimou L, Chichung Lie D, Schroeder T, Berninger B (2013) Oligodendrogliogenic and neurogenic adult subependymal zone neural stem cells constitute distinct lineages and exhibit differential responsiveness to Wnt signalling. Nat Cell Biol 15: 602-13
Sylvester JB, Rich CA, Yi C, Peres JN, Houart C, Streelman JT (2013) Competing signals drive telencephalon diversity. Nat Commun 4: 1745
Basson MA, Wingate RJ (2013) Congenital hypoplasia of the cerebellum: developmental causes and behavioral consequences. Front Neuroanat 7: 29
Wanner SJ, Saeger I, Guthrie S, Prince VE (2013) Facial motor neuron migration advances. Curr Opin Neurobiol 23: 943-50
Clark C, Austen O, Poparic I, Guthrie S (2013) Alpha2-Chimaerin regulates a key axon guidance transition during development of the oculomotor projection. J Neurosci 33: 16540-51
Yap K, Makeyev EV (2013) Regulation of gene expression in mammalian nervous system through alternative pre-mRNA splicing coupled with RNA quality control mechanisms. Mol Cell Neurosci 56: 420-8
Jego S, Glasgow SD, Herrera CG, Ekstrand M, Reed SJ, Boyce R, Friedman J, Burdakov D, Adamantidis AR (2013) Optogenetic identification of a rapid eye movement sleep modulatory circuit in the hypothalamus. Nat Neurosci 16: 1637-43
Sterratt DC, Lyngholm D, Willshaw DJ, Thompson ID (2013) Standard anatomical and visual space for the mouse retina: computational reconstruction and transformation of flattened retinae with the Retistruct package. PLoS Comput Biol 9: e1002921
Villar-Cerviño V, Molano-Mazón M, Catchpole T, Valdeolmillos M, Henkemeyer M, Martínez LM, Borrell V, Marín O (2013) Contact repulsion controls the dispersion and final distribution of Cajal-Retzius cells. Neuron 77: 457-71
Ciceri G, Dehorter N, Sols I, Huang ZJ, Maravall M, Marín O (2013) Lineage-specific laminar organization of cortical GABAergic interneurons. Nat Neurosci 16: 1199-210
Hay DB, Williams D, Stahl D, Wingate RJ (2013) Using Drawings of the Brain Cell to Exhibit Expertise in Neuroscience: Exploring the Boundaries of Experimental Culture Science Education 93 (3): 468-491
Lleras-Forero L, Tambalo M, Christophorou N, Chambers D, Houart C, Streit A (2013) Neuropeptides: developmental signals in placode progenitor formation. Dev Cell 26: 195-203
Robertshaw E, Matsumoto K, Lumsden A, Kiecker C (2013) Irx3 and Pax6 establish differential competence for Shh-mediated induction of GABAergic and glutamatergic neurons of the thalamus. Proc Natl Acad Sci U S A 110: E3919-26
Antinucci P, Nikolaou N, Meyer MP, Hindges R (2013) Teneurin-3 specifies morphological and functional connectivity of retinal ganglion cells in the vertebrate visual system. Cell Rep 5: 582-92
Levy P, Larsen C (2013) Odd-skipped labels a group of distinct neurons associated with the mushroom body and optic lobe in the adult Drosophila brain. J Comp Neurol 521: 3716-40
Povellato G,Tuxworth RI, Hanger DP,Tear G (2013) Modification of the Drosophila model of in vivo Tau toxicity reveals protective phosphorylation by GSK3β Biology Open Nov 28: bio.201366
van den Brink DM, Banerji O, Tear G (2013) Commissureless regulation of axon outgrowth across the midline is independent of Rab function. PLoS One 8: e64427
Bates TJ, Vonica A, Heasman J, Brivanlou AH, Bell E (2013) Coco regulates dorsoventral specification of germ layers via inhibition of TGF? signalling. Development 140: 4177-4181
Basson MA and Wingate RJ (2013) Congenital hypoplasia of the cerebellum: developmental causes and behavioural consequences.
Hunter PR, Lowe AS, Thompson ID, Meyer MP (2013) Emergent properties of the optic tectum revealed by population analysis of direction and orientation selectivity. J Neurosci 33: 13940-5
Lowe AS, Nikolaou N, Hunter PR, Thompson ID, Meyer MP (2013) A Systems-Based Dissection of Retinal Inputs to the Zebrafish Tectum Reveals Different Rules for Different Functional Classes during Development. J Neurosci 33: 13946-56
Worth DC, Daly CN, Geraldo S, Oozeer F, Gordon-Weeks PR (2013) Drebrin contains a cryptic F-actin-bundling activity regulated by Cdk5 phosphorylation. J Cell Biol 202: 793-806
Thomas-Jinu S, Houart C (2013) Dynamic expression of neurexophilin1 during zebrafish embryonic development. Gene Expr Patterns 13: 395-401
Gilthorpe JD, Oozeer F, Nash J, Calvo M, Bennett DLH, Lumsden A, Pini A (2013) Extracellular histone H1 is neurotoxic and drives a pro-inflammatory response in microglia F1000Research 2:148
Otsuka-Tanaka Y, Oommen S, Kawasaki M, Kawasaki K, Imam N, Jalani-Ghazani F, Hindges R, Sharpe PT, Ohazama A (2013) Oral lining mucosa development depends on mesenchymal microRNAs. J Dent Res 92: 229-34
Maiorano NA, Hindges R (2013) Restricted perinatal retinal degeneration induces retina reshaping and correlated structural rearrangement of the retinotopic map. Nat Commun 4: 1938
Sousa-Nunes R, Somers WG (2013) Mechanisms of asymmetric progenitor divisions in the Drosophila central nervous system. Adv Exp Med Biol 786: 79-102
Graham A, Shimeld SM (2013) The origin and evolution of the ectodermal placodes. J Anat 222: 32-40
Hu Y, Poopalasundaram S, Graham A, Bouloux PM (2013) GnRH neuronal migration and olfactory bulb neurite outgrowth are dependent on FGF receptor 1 signaling, specifically via the PI3K p110? isoform in chick embryo. Endocrinology 154: 388-99
Butts T, Graham A (2013) Old before their time: the ancient origins of the neural crest. Pigment Cell Melanoma Res 26: 287-89
Evans MD, Sammons RP, Lebron S, Dumitrescu AS, Watkins TB, Uebele VN, Renger JJ, Grubb MS (2013) Calcineurin signaling mediates activity-dependent relocation of the axon initial segment. J Neurosci 33: 6950-63
Girdler GC, Araya C, Ren X, Clarke JD (2013) Developmental time rather than local environment regulates the schedule of epithelial polarization in the zebrafish neural rod. Neural Dev 8: 5
Walker AS, Burrone J, Meyer MP (2013) Functional imaging in the zebrafish retinotectal system using RGECO. Front Neural Circuits 7: 34

2012

Robertshaw E, Kiecker C (2012) Phylogenetic origins of brain organisers. Scientifica (Cairo) 2012: 475017
Heinrich C, Götz M, Berninger B (2012) Reprogramming of postnatal astroglia of the mouse neocortex into functional, synapse-forming neurons. Methods Mol Biol 814: 485-98
Mu L, Berti L, Masserdotti G, Covic M, Michaelidis TM, Doberauer K, Merz K, Rehfeld F, Haslinger A, Wegner M, Sock E, Lefebvre V, Couillard-Despres S, Aigner L, Berninger B, Lie DC (2012) SoxC transcription factors are required for neuronal differentiation in adult hippocampal neurogenesis. J Neurosci 32: 3067-80
Chen X, Lepier A, Berninger B, Tolkovsky AM, Herbert J (2012) Cultured subventricular zone progenitor cells transduced with neurogenin-2 become mature glutamatergic neurons and integrate into the dentate gyrus. PLoS One 7: e31547
Karow M, Sánchez R, Schichor C, Masserdotti G, Ortega F, Heinrich C, Gascón S, Khan MA, Lie DC, Dellavalle A, Cossu G, Goldbrunner R, Götz M, Berninger B (2012) Reprogramming of pericyte-derived cells of the adult human brain into induced neuronal cells. Cell Stem Cell 11: 471-6
Danesin C, Houart C (2012) A Fox stops the Wnt: implications for forebrain development and diseases. Curr Opin Genet Dev 22: 323-30
Bielen H, Houart C (2012) BMP signaling protects telencephalic fate by repressing eye identity and its Cxcr4-dependent morphogenesis. Dev Cell 23: 812-22
Khan AG, Sarangi M, Bhalla US (2012) Rats track odour trails accurately using a multi-layered strategy with near-optimal sampling. Nat Commun 3: 703
Loncle N, Williams DW (2012) An interaction screen identifies headcase as a regulator of large-scale pruning. J Neurosci 32: 17086-96
Marín O (2012) Interneuron dysfunction in psychiatric disorders. Nat Rev Neurosci 13: 107-20

Ahmed AI, Shtaya AB, Zaben MJ, Owens EV, Kiecker C, Gray WP (2012) Endogenous GFAP-positive neural stem/progenitor cells in the postnatal mouse cortex are activated following traumatic brain injury. J Neurotrauma 29: 828-42
Dai W, Zhang G, Makeyev EV (2012) RNA-binding protein HuR autoregulates its expression by promoting alternative polyadenylation site usage. Nucleic Acids Res 40: 787-800
Juvvuna PK, Khandelia P, Lee LM, Makeyev EV (2012) Argonaute identity defines the length of mature mammalian microRNAs. Nucleic Acids Res 40: 6808-20
Campion C, Gilthorpe J, Gogoi R, and Pini A (2012) Sulfated oligosaccharides for use in treatment of neurodegenerative diseases Published patent WO 2012160337

Yap K, Lim ZQ, Khandelia P, Friedman B, Makeyev EV (2012) Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention. Genes Dev 26: 1209-23
Borrell V, Cárdenas A, Ciceri G, Galcerán J, Flames N, Pla R, Nóbrega-Pereira S, García-Frigola C, Peregrín S, Zhao Z, Ma L, Tessier-Lavigne M, Marín O (2012) Slit/Robo signaling modulates the proliferation of central nervous system progenitors. Neuron 76: 338-52
Writer MJ, Kyrtatos PG, Bienemann AS, Pugh JA, Lowe AS, Villegas-Llerena C, Kenny GD, White EA, Gill SS, McLeod CW, Lythgoe MF, Hart SL (2012) Lipid peptide nanocomplexes for gene delivery and magnetic resonance imaging in the brain. J Control Release 162: 340-8
Hutson TH, Foster E, Dawes JM, Hindges R, Yáñez-Muñoz RJ, Moon LD (2012) Lentiviral vectors encoding short hairpin RNAs efficiently transduce and knockdown LINGO-1 but induce an interferon response and cytotoxicity in central nervous system neurones. J Gene Med 14: 299-315
Oommen S, Otsuka-Tanaka Y, Imam N, Kawasaki M, Kawasaki K, Jalani-Ghazani F, Anderegg A, Awatramani R, Hindges R, Sharpe PT, Ohazama A (2012) Distinct roles of microRNAs in epithelium and mesenchyme during tooth development. Dev Dyn 241: 1465-72
Ertürk A, Mauch CP, Hellal F, Förstner F, Keck T, Becker K, Jährling N, Steffens H, Richter M, Hübener M, Kramer E, Kirchhoff F, Dodt HU, Bradke F (2012) Three-dimensional imaging of the unsectioned adult spinal cord to assess axon regeneration and glial responses after injury. Nat Med 18: 166-71