Publications

2007

Schuster EF, Blanc E, Partridge L, Thornton JM (2007) Correcting for sequence biases in present/absent calls. Genome Biol

Schuster EF, Blanc E, Partridge L, Thornton JM (2007) Estimation and correction of non-specific binding in a large-scale spike-in experiment. Genome Biol

McElwee JJ, Schuster E, Blanc E, Piper MD, Thomas JH, Patel DS, Selman C, Withers DJ, Thornton JM, Partridge L, Gems D (2007) Evolutionary conservation of regulated longevity assurance mechanisms. Genome Biol

Dolan J, Walshe K, Alsbury S, Hokamp K, O'Keeffe S, Okafuji T, Miller SF, Tear G, Mitchell KJ (2007) The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns. BMC Genomics

Bernstein HG, Smalla KH, Bogerts B, Gordon-Weeks PR, Beesley PW, Gundelfinger ED, Kreutz MR (2007) The immunolocalization of the synaptic glycoprotein neuroplastin differs substantially between the human and the rodent brain. Brain Res

Guthrie S (2007) Patterning and axon guidance of cranial motor neurons. Nat Rev Neurosci

Hoffman TL, Javier AL, Campeau SA, Knight RD, Schilling TF (2007) Tfap2 transcription factors in zebrafish neural crest development and ectodermal evolution. J Exp Zoolog B Mol Dev Evol

Ahmed A, Eickholt BJ (2007) Intracellular kinases in semaphorin signaling. Adv Exp Med Biol

Eickholt BJ, Ahmed AI, Davies M, Papakonstanti EA, Pearce W, Starkey ML, Bilancio A, Need AC, Smith AJ, Hall SM, Hamers FP, Giese KP, Bradbury EJ, Vanhaesebroeck B (2007) Control of Axonal Growth and Regeneration of Sensory Neurons by the p110delta PI 3-Kinase. PLoS ONE

Reber M, Hindges R, Lemke G (2007) Eph receptors and ephrin ligands in axon guidance. Adv Exp Med Biol

Wilson LJ, Myat A, Sharma A, Maden M, Wingate RJ (2007) Retinoic acid is a potential dorsalising signal in the late embryonic chick hindbrain. BMC Dev Biol

Guinazu MF, Chambers D, Lumsden A, Kiecker C (2007) Tissue interactions in the developing chick diencephalon. Neural Develop

Chilton JK & Gordon-Weeks PR (2007) Role of microtubules and MAPs during neuritogenesis. In Intracellular Mechanisms for Neuritogenesis (de Curtis, I. ed) Springer

Chambers D, Wilson L, Maden M, Lumsden A (2007) RALDH-independent generation of retinoic acid during vertebrate embryogenesis by CYP1B1. Development

Reijntjes S, Rodaway A, Maden M (2007) The retinoic acid metabolising gene, CYP26B1, patterns the cartilaginous cranial neural crest in zebrafish. Int J Dev Biol

Stinchcombe SV, Maden M (2007) Retinoic Acid-induced Alveolar Regeneration: Critical Differences in Strain Sensitivity. Am J Respir Cell Mol Biol

Maden M (2007) Retinoic acid in the development, regeneration and maintenance of the nervous system. Nat Rev Neurosci

Andreae LC, Peukert D, Lumsden A, Gilthorpe JD (2007) Analysis of Lrrn1 expression and its relationship to neuromeric boundaries during chick neural development. Neural Develop

Upton AL, Cordery PM, Thompson ID (2007) Emergence of topography in the developing hamster retinocollicular projection: axial differences and the role of cell death. Eur J Neurosci

Suchanek M, Hynynen R, Wohlfahrt G, Lehto M, Johansson M, Saarinen H, Radzikowska A, Thiele C, Olkkonen VM (2007) The mammalian oxysterol-binding protein-related proteins (ORPs) bind 25-hydroxycholesterol in an evolutionarily conserved pocket. Biochem J

Johansson M, Rocha N, Zwart W, Jordens I, Janssen L, Kuijl C, Olkkonen VM, Neefjes J (2007) Activation of endosomal dynein motors by stepwise assembly of Rab7-RILP-p150Glued, ORP1L, and the receptor betalll spectrin. J Cell Biol

Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A (2007) Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo. Int J Dev Biol

Graham A (2007) Deconstructing the pharyngeal metamere. J Exp Zoolog B Mol Dev Evol

Graham A, Blentic A, Duque S, Begbie J (2007) Delamination of cells from neurogenic placodes does not involve an epithelial-to-mesenchymal transition. Development

Mann CJ, Osborn DP, Hughes SM (2007) Vestigial-like-2b (VITO-1b) and Tead-3a (Tef-5a) expression in zebrafish skeletal muscle, brain and notochord. Gene Expr Patterns

Bron R, Vermeren M, Kokot N, Little GE, Mitchell KJ, Andrews W, Cohen J (2007) Boundary cap cells constrain spinal motor neuron somal migration at motor exit points by a semaphorin - plexin mechanism. Neural Develop

Hinits Y, Hughes SM (2007) Mef2s are required for thick filament formation in nascent muscle fibres. Development

Hinits Y, Osborn DP, Carvajal JJ, Rigby PW, Hughes SM (2007) Mrf4 (myf6) is dynamically expressed in differentiated zebrafish skeletal muscle. Gene Expr Patterns

Wendl T, Adzic D, Schoenebeck JJ, Scholpp S, Brand M, Yelon D, Rohr KB (2007) Early developmental specification of the thyroid gland depends on han-expressing surrounding tissue and on FGF signals. Development

Scholpp S, Foucher I, Staudt N, Peukert D, Lumsden A, Houart C (2007) Otx1l, Otx2 and Irx1b establish and position the ZLI in the diencephalon. Development

Schebesta A, McManus S, Salvagiotto G, Delogu A, Busslinger GA, Busslinger M (2007) Transcription Factor Pax5 Activates the Chromatin of Key Genes Involved in B Cell Signaling, Adhesion, Migration, and Immune Function. Immunity

Mason I (2007) Initiation to end point: the multiple roles of fibroblast growth factors in neural development. Nat Rev Neurosci

Caneparo L, Huang YL, Staudt N, Tada M, Ahrendt R, Kazanskaya O, Niehrs C, Houart C (2007) Dickkopf-1 regulates gastrulation movements by coordinated modulation of Wnt/beta catenin and Wnt/PCP activities, through interaction with the Dally-like homolog Knypek. Genes Dev

Staudt N, Houart C (2007) The Prethalamus Is Established during Gastrulation and Influences Diencephalic Regionalization. PLoS Biol

Cosker KE, Eickholt BJ (2007) Phosphoinositide 3-kinase signalling events controlling axonal morphogenesis. Biochem Soc Trans

Fazzari P, Penachioni J, Gianola S, Rossi F, Eickholt BJ, Maina F, Alexopoulou L, Sottile A, Comoglio PM, Flavell RA, Tamagnone L (2007) PlexinB1 plays a redundant role during mouse development and in tumour angiogenesis. BMC Dev Biol

Cobaleda C, Schebesta A, Delogu A, Busslinger M (2007) Pax5: the guardian of B cell identity and function. Nat Immunol

Canning CA, Lee L, Irving C, Mason I, Jones CM (2007) Sustained interactive Wnt and FGF signaling is required to maintain isthmic identity. Dev Biol

Jin H, Tan S, Hermanowski J, Böhm S, Pacheco S, McCauley JM, Greener MJ, Hinits Y, Hughes SM, Sharpe PT, Roberts RG (2007) The dystrotelin, dystrophin and dystrobrevin superfamily: new paralogues and old isoforms. BMC Genomics

McCormick LJ, Hutt JA, Hazan J, Houart C, Cohen J. (2007) The homeodomain transcription factor drg11 is expressed in primary sensory neurons and their putative CNS targets during embryonic development of the zebrafish Gene Expr Patterns

2006

Sawamoto K, Wichterle H, Gonzalez-Perez O, Cholfin JA, Yamada M, Spassky N, Murcia NS, Garcia-Verdugo JM, Marin O, Rubenstein JL, Tessier-Lavigne M, Okano H, Alvarez-Buylla A (2006) New neurons follow the flow of cerebrospinal fluid in the adult brain. Science

López-Bendito G, Cautinat A, Sánchez JA, Bielle F, Flames N, Garratt AN, Talmage DA, Role LW, Charnay P, Marín O, Garel S (2006) Tangential neuronal migration controls axon guidance: a role for neuregulin-1 in thalamocortical axon navigation. Cell

Pla R, Borrell V, Flames N, Marín O (2006) Layer acquisition by cortical GABAergic interneurons is independent of Reelin signaling. J Neurosci

Borrell V, Marín O (2006) Meninges control tangential migration of hem-derived Cajal-Retzius cells via CXCL12/CXCR4 signaling. Nat Neurosci

Marín O, Valdeolmillos M, Moya F (2006) Neurons in motion: same principles for different shapes? Trends Neurosci

Strøbaek D, Hougaard C, Johansen TH, Sørensen US, Nielsen EØ, Nielsen KS, Taylor RD, Pedarzani P, Christophersen P (2006) Inhibitory gating modulation of small conductance Ca2+-activated K+ channels by the synthetic compound (R)-N-(benzimidazol-2-yl)-1,2,3,4-tetrahydro-1-naphtylamine (NS8593) reduces afterhyperpolarizing current in hippocampal CA1 neurons. Mol Pharmacol

Kiecker, C (2006) Head Induction. Chapter in "Cell Signaling and Growth Factors in Development". ed. K. Unsicker and K. Krieglstein, Wiley-VCH, Weinheim.

Danesin C, Agius E, Escalas N, Ai X, Emerson C, Cochard P, Soula C (2006) Ventral neural progenitors switch toward an oligodendroglial fate in response to increased Sonic hedgehog (Shh) activity: involvement of Sulfatase 1 in modulating Shh signaling in the ventral spinal cord. J Neurosci

Clarke J (2006) Cell migration: neurons go with the flow. Curr Biol

Chambers D, Fishell G (2006) Functional genomics of early cortex patterning. Genome Biol

Larsen C, Franch-Marro X, Hartenstein V, Alexandre C, Vincent JP (2006) An efficient promoter trap for detection of patterned gene expression and subsequent functional analysis in Drosophila. Proc Natl Acad Sci U S A

Mione M, Lele Z, Kwong CT, Concha ML, Clarke JD (2006) Expression of pcp4a in subpopulations of CNS neurons in zebrafish. J Comp Neurol

Johanson Z, Smith MM, Joss J (2006) Early scale development in Heterodontus (Heterodontiformes; Chondrichthyes): a novel chondrichthyan scale pattern J. Acta. Zool.

Selman C, Kerrison ND, Cooray A, Piper MD, Lingard SJ, Barton RH, Schuster EF, Blanc E, Gems D, Nicholson JK, Thornton JM, Partridge L, Withers DJ (2006) Coordinated multitissue transcriptional and plasma metabonomic profiles following acute caloric restriction in mice. Physiol Genomics

McElwee JJ, Schuster E, Blanc E, Thornton J, Gems D (2006) Erratum to "Diapause-associated metabolic traits reiterated in long-lived daf-2 mutants in the nematode Caenorhabditis elegans" [Mech. Ageing Dev. 127 (5) (2006) 458-472]. Mech Ageing Dev

Ahmad-Annuar A, Ciani L, Simeonidis I, Herreros J, Fredj NB, Rosso SB, Hall A, Brickley S, Salinas PC (2006) Signaling across the synapse: a role for Wnt and Dishevelled in presynaptic assembly and neurotransmitter release. J Cell Biol

Zhu Y, Guthrie S, Murakami F (2006) Ephrin A/EphA controls the rostral turning polarity of a lateral commissural tract in chick hindbrain. Development

Knight RD, Schilling TF (2006) Cranial neural crest and development of the head skeleton. Adv Exp Med Biol

Kuerner KM, Steinbeisser H (2006) Expression analysis of IGFBP-rP10, IGFBP-like and Mig30 in early Xenopus development. Dev Dyn

Lou X, Fang P, Li S, Hu RY, Kuerner KM, Steinbeisser H, Ding X (2006) Xenopus Tbx6 mediates posterior patterning via activation of Wnt and FGF signalling. Cell Res

Lledo PM, Alonso M, Grubb MS (2006) Adult neurogenesis and functional plasticity in neuronal circuits. Nat Rev Neurosci

Yip PK, Wong LF, Pattinson D, Battaglia A, Grist J, Bradbury EJ, Maden M, McMahon SB, Mazarakis ND (2006) Lentiviral vector expressing retinoic acid receptor beta2 promotes recovery of function after corticospinal tract injury in the adult rat spinal cord. Hum Mol Genet

So PL, Yip PK, Bunting S, Wong LF, Mazarakis ND, Hall S, McMahon S, Maden M, Corcoran JP (2006) Interactions between retinoic acid, nerve growth factor and sonic hedgehog signalling pathways in neurite outgrowth. Dev Biol

Olkkonen VM, Johansson M, Suchanek M, Yan D, Hynynen R, Ehnholm C, Jauhiainen M, Thiele C, Lehto M (2006) The OSBP-related proteins (ORPs): global sterol sensors for co-ordination of cellular lipid metabolism, membrane trafficking and signalling processes? Biochem Soc Trans

Staudt N, Fellert S, Chung HR, Jäckle H, Vorbrüggen G (2006) Mutations of the Drosophila zinc finger-encoding gene vielfältig impair mitotic cell divisions and cause improper chromosome segregation. Mol Biol Cell

Delogu A, Schebesta A, Sun Q, Aschenbrenner K, Perlot T, Busslinger M (2006) Gene repression by Pax5 in B cells is essential for blood cell homeostasis and is reversed in plasma cells. Immunity

Heit JJ, Apelqvist AA, Gu X, Winslow MM, Neilson JR, Crabtree GR, Kim SK (2006) Calcineurin/NFAT signalling regulates pancreatic beta-cell growth and function. Nature

Smart NG, Apelqvist AA, Gu X, Harmon EB, Topper JN, MacDonald RJ, Kim SK (2006) Conditional expression of Smad7 in pancreatic beta cells disrupts TGF-beta signaling and induces reversible diabetes mellitus. PLoS Biol

D'Antonio M, Michalovich D, Paterson M, Droggiti A, Woodhoo A, Mirsky R, Jessen KR (2006) Gene profiling and bioinformatic analysis of Schwann cell embryonic development and myelination. Glia

Cadman SM, Kim SH, Hu Y, González-Martínez D, Bouloux PM (2006) Molecular Pathogenesis of Kallmann's Syndrome. Horm Res

Hammond CL, Hinits Y, Osborn DP, Minchin JE, Tettamanti G, Hughes SM (2006) Signals and myogenic regulatory factors restrict pax3 and pax7 expression to dermomyotome-like tissue in zebrafish. Dev Biol

Slack C, Somers WG, Sousa-Nunes R, Chia W, Overton PM (2006) A mosaic genetic screen for novel mutations affecting Drosophila neuroblast divisions. BMC Genet

Prakash N, Brodski C, Naserke T, Puelles E, Gogoi R, Hall A, Panhuysen M, Echevarria D, Sussel L, Weisenhorn DM, Martinez S, Arenas E, Simeone A, Wurst W (2006) A Wnt1-regulated genetic network controls the identity and fate of midbrain-dopaminergic progenitors in vivo. Development

Puelles E, Acampora D, Gogoi R, Tuorto F, Papalia A, Guillemot F, Ang SL, Simeone A (2006) Otx2 controls identity and fate of glutamatergic progenitors of the thalamus by repressing GABAergic differentiation. J Neurosci

Basson MA, Watson-Johnson J, Shakya R, Akbulut S, Hyink D, Costantini FD, Wilson PD, Mason IJ, Licht JD (2006) Branching morphogenesis of the ureteric epithelium during kidney development is coordinated by the opposing functions of GDNF and Sprouty1. Dev Biol

Cornbrooks C, Bland C, Williams DW, Truman JW, Rand MD (2006) Delta expression in post-mitotic neurons identifies distinct subsets of adult-specific lineages in Drosophila. J Neurobiol

Williams DW, Kondo S, Krzyzanowska A, Hiromi Y, Truman JW (2006) Local caspase activity directs engulfment of dendrites during pruning. Nat Neurosci

Meyer MP, Smith SJ (2006) Evidence from in vivo imaging that synaptogenesis guides the growth and branching of axonal arbors by two distinct mechanisms. J Neurosci

Erickson T, Scholpp S, Brand M, Moens CB, Jan Waskiewicz A (2006) Pbx proteins cooperate with Engrailed to pattern the midbrain-hindbrain and diencephalic-mesencephalic boundaries. Dev Biol

Mann CJ, Hinits Y, Hughes SM (2006) Comparison of neurolin (ALCAM) and neurolin-like cell adhesion molecule (NLCAM) expression in zebrafish. Gene Expr Patterns

Fraser GJ, Berkovitz BK, Graham A, Smith MM (2006) Gene deployment for tooth replacement in the rainbow trout (Oncorhynchus mykiss): a developmental model for evolution of the osteichthyan dentition. Evol Dev

Wingate R, Kwint M (2006) Imagining the brain cell: the neuron in visual culture. Nat Rev Neurosci

Reber M, Hindges R, Lemke G (2006) In: Axon Growth and Guidance, Landes Bioscience. Ed. Bagnard D
Eph receptors and ephrin ligands in axon guidance. Book chapter

Wilson LJ, Wingate RJ (2006) Temporal identity transition in the avian cerebellar rhombic lip. Dev Biol

Buescher M, Tio M, Tear G, Overton PM, Brook WJ, Chia W (2006) Functions of the segment polarity genes midline and H15 in Drosophila melanogaster neurogenesis. Dev Biol

Wakefield S, Tear G (2006) The Drosophila reticulon, Rtnl-1, has multiple differentially expressed isoforms that are associated with a sub-compartment of the endoplasmic reticulum. Cell Mol Life Sci

Gögel S, Wakefield S, Tear G, Klämbt C and Gordon-Weeks P R (2006) The Drosophila microtubule associated protein Futsch is phosphorylated by Shaggy/Zeste-white 3 at a homologous GSK3b phosphorylation site in MAP1B. Mol Cell Neurosci

Peris L, Andrieux A, Thery M, Fauré J, Saoudi Y, Lafanechere L, Chilton J K, Gordon-Weeks P R, Galjart N, Bornens M, Wordeman L, Wehland J, Andrieux A and Job D (2006) Tubulin tyrosination is a major factor affecting recruitment of CAP-Gly proteins at microtubule +ends J. Cell Biol.

Scholpp S, Wolf O, Brand M, Lumsden A (2006) Hedgehog signalling from the zona limitans intrathalamica orchestrates patterning of the zebrafish diencephalon. Development

Wong LF, Yip PK, Battaglia A, Grist J, Corcoran J, Maden M, Azzouz M, Kingsman SM, Kingsman AJ, Mazarakis ND, McMahon SB (2006) Retinoic acid receptor beta2 promotes functional regeneration of sensory axons in the spinal cord. Nat Neurosci

Maden M (2006) Retinoids have differing efficacies on alveolar regeneration in a dexamethasone-treated mouse. Am J Respir Cell Mol Biol

Maden M (2006) Retinoids and spinal cord development. J Neurobiol

Tendeng C, Houart C (2006) Cloning and embryonic expression of five distinct sfrp genes in the zebrafish Danio rerio. Gene Expr Patterns

Foucher I, Mione M, Simeone A, Acampora D, Bally-Cuif L, Houart C (2006) Differentiation of cerebellar cell identities in absence of Fgf signalling in zebrafish Otx morphants. Development