Publications

2008

Chambers D, Lumsden A (2008) Profiling gene transcription in the developing embryo: microarray analysis on gene chips. Methods Mol Biol 461: 631-55
Mason I (2008) Chick embryos: incubation and isolation. Methods Mol Biol 461: 231-4
Mahmood R, Mason I (2008) In-situ hybridization of radioactive riboprobes to RNA in tissue sections. Methods Mol Biol 461: 675-86
Mason I (2008) Immunohistochemistry on whole embryos. Methods Mol Biol 461: 725-8
Graham A (2008) Whole embryo assays for programmed cell death. Methods Mol Biol 461: 729-34
Graham A (2008) RT-PCR on embryos using degenerate oligonucleotide primers. Methods Mol Biol 461: 657-66
Guthrie S (2008) Transplantation of avian neural tissue. Methods Mol Biol 461: 305-11
Clarke JD (2008) Using fluorescent dyes for fate mapping, lineage analysis, and axon tracing in the chick embryo. Methods Mol Biol 461: 351-61
Wingate RJ (2008) Microscopy and photomicrography techniques. Methods Mol Biol 461: 747-71
Marler KJ, Becker-Barroso E, Martínez A, Llovera M, Wentzel C, Poopalasundaram S, Hindges R, Soriano E, Comella J, Drescher U (2008) A TrkB/EphrinA interaction controls retinal axon branching and synaptogenesis. J Neurosci 28: 12700-12
Lowe AS, Barker GJ, Beech JS, Ireland MD, Williams SC (2008) A method for removing global effects in small-animal functional MRI. NMR Biomed 21: 53-8
Maggs AM, Huxley C, Hughes SM (2008) Nerve-dependent changes in skeletal muscle myosin heavy chain after experimental denervation and cross-reinnervation and in a demyelinating mouse model of Charcot-Marie-Tooth disease type 1A. Muscle Nerve 38: 1572-1584
Minchin JE, Hughes SM (2008) Sequential actions of Pax3 and Pax7 drive xanthophore development in zebrafish neural crest. Dev Biol 317: 508-22
Alonso Bde C, Lowe AS, Dear JP, Lee KC, Williams SC, Finnerty GT (2008) Sensory inputs from whisking movements modify cortical whisker maps visualized with functional magnetic resonance imaging. Cereb Cortex 18: 1314-25
Lowe AS, Thompson ID, Sibson NR (2008) Quantitative manganese tract tracing: dose-dependent and activity-independent terminal labelling in the mouse visual system. NMR Biomed 21: 859-67
Russek-Blum N, Gutnick A, Nabel-Rosen H, Blechman J, Staudt N, Dorsky RI, Houart C, Levkowitz G (2008) Dopaminergic neuronal cluster size is determined during early forebrain patterning. Development 135: 3401-13
Alonso M, Ortega-Pérez I, Grubb MS, Bourgeois JP, Charneau P, Lledo PM (2008) Turning astrocytes from the rostral migratory stream into neurons: a role for the olfactory sensory organ. J Neurosci 28: 11089-102
Geraldo S, Khanzada UK, Parsons M, Chilton JK, Gordon-Weeks PR (2008) Targeting of the F-actin-binding protein drebrin by the microtubule plus-tip protein EB3 is required for neuritogenesis. Nat Cell Biol 10: 1181-9
Vashlishan AB, Madison JM, Dybbs M, Bai J, Sieburth D, Ch'ng Q, Tavazoie M, Kaplan JM (2008) An RNAi screen identifies genes that regulate GABA synapses. Neuron 58: 346-61
Selman C, Lingard S, Choudhury AI, Batterham RL, Claret M, Clements M, Ramadani F, Okkenhaug K, Schuster E, Blanc E, Piper MD, Al-Qassab H, Speakman JR, Carmignac D, Robinson IC, Thornton JM, Gems D, Partridge L, Withers DJ (2008) Evidence for lifespan extension and delayed age-related biomarkers in insulin receptor substrate 1 null mice. FASEB J 22: 807-18
Wong R, Piper MD, Blanc E, Partridge L (2008) Pitfalls of measuring feeding rate in the fruit fly Drosophila melanogaster. Nat Methods 5: 214-5; author reply 215
Trevelyan AJ, Upton AL, Cordery PM, Thompson ID (2008) An experimentally induced duplication of retinotopic mapping within the hamster primary visual cortex. Eur J Neurosci 26: 3277-90
Harrison B, Kraus M, Burch L, Stevens C, Craig A, Gordon-Weeks P, Hupp TR (2008) DAPK-1 Binding to a Linear Peptide Motif in MAP1B Stimulates Autophagy and Membrane Blebbing. J Biol Chem 283: 9999-10014
Watson S, Chambers D, Hobbs C, Doherty P, Graham A (2008) The endocannabinoid receptor, CB1, is required for normal axonal growth and fasciculation. Mol Cell Neurosci 75
Knight RD, Mebus K, Roehl HH (2008) Mandibular arch muscle identity is regulated by a conserved molecular process during vertebrate development. J Exp Zoolog B Mol Dev Evol
Alfonsi F, Filippi P, Salaun D, deLapeyrière O, Durbec P (2008) LIFR beta plays a major role in neuronal identity determination and glial differentiation in the mouse facial nucleus. Dev Biol 313: 267-78
Virard I, Gubkina O, Alfonsi F, Durbec P (2008) Characterization of heterogeneous glial cell populations involved in dehydration-induced proliferation in the adult rat neurohypophysis. Neuroscience 151: 82-91
Schwarz Q, Vieira JM, Howard B, Eickholt BJ, Ruhrberg C (2008) Neuropilin 1 and 2 control cranial gangliogenesis and axon guidance through neural crest cells. Development
Grubb MS, Nissant A, Murray K, Lledo PM (2008) Functional maturation of the first synapse in olfaction: development and adult neurogenesis. J Neurosci 28: 2919-32
Blentic A, Tandon P, Payton S, Walshe J, Carney T, Kelsh RN, Mason I, Graham A (2008) The emergence of ectomesenchyme. Dev Dyn 237: 592-601
Bannister R, McGonnell IM, Graham A, Thorndyke MC, Beesley PW (2008) Coelomic expression of a novel bone morphogenetic protein in regenerating arms of the brittle star Amphiura filiformis. Dev Genes Evol 218: 33-8
van Diepen MT, Eickholt BJ (2008) Function of PTEN during the formation and maintenance of neuronal circuits in the brain. Dev Neurosci 30: 59-64
Cosker KE, Shadan S, van Diepen M, Morgan C, Li M, Allen-Baume V, Hobbs C, Doherty P, Cockcroft S, Eickholt BJ (2008) Regulation of PI3K signalling by the phosphatidylinositol transfer protein PITP{alpha} during axonal extension in hippocampal neurons. J Cell Sci
Hedge TA, Mason I (2008) Expression of Shisa2, a modulator of both Wnt and Fgf signaling, in the chick embryo. Int J Dev Biol 52: 81-5
Johanson Z, Tanaka M, Chaplin N, Smith M (2008) Early Palaeozoic dentine and patterned scales in the embryonic catshark tail. Biol Lett 4: 87-90

2007

Henn IH, Bouman L, Schlehe JS, Schlierf A, Schramm JE, Wegener E, Nakaso K, Culmsee C, Berninger B, Krappmann D, Tatzelt J, Winklhofer KF (2007) Parkin mediates neuroprotection through activation of IkappaB kinase/nuclear factor-kappaB signaling. J Neurosci 27: 1868-78
Berninger B, Guillemot F, Götz M (2007) Directing neurotransmitter identity of neurones derived from expanded adult neural stem cells. Eur J Neurosci 25: 2581-90
Berninger B, Costa MR, Koch U, Schroeder T, Sutor B, Grothe B, Götz M (2007) Functional properties of neurons derived from in vitro reprogrammed postnatal astroglia. J Neurosci 27: 8654-64
Yabut O, Renfro A, Niu S, Swann JW, Marín O, D'Arcangelo G (2007) Abnormal laminar position and dendrite development of interneurons in the reeler forebrain. Brain Res 1140: 75-83

López-Bendito G, Flames N, Ma L, Fouquet C, Di Meglio T, Chedotal A, Tessier-Lavigne M, Marín O (2007) Robo1 and Robo2 cooperate to control the guidance of major axonal tracts in the mammalian forebrain. J Neurosci 27: 3395-407
Flames N, Pla R, Gelman DM, Rubenstein JL, Puelles L, Marín O (2007) Delineation of multiple subpallial progenitor domains by the combinatorial expression of transcriptional codes. J Neurosci 27: 9682-95
Fogarty M, Grist M, Gelman D, Marín O, Pachnis V, Kessaris N (2007) Spatial genetic patterning of the embryonic neuroepithelium generates GABAergic interneuron diversity in the adult cortex. J Neurosci 27: 10935-46

Makeyev EV, Zhang J, Carrasco MA, Maniatis T (2007) The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing. Mol Cell 27: 435-48
Williams RH, Jensen LT, Verkhratsky A, Fugger L, Burdakov D (2007) Control of hypothalamic orexin neurons by acid and CO2. Proc Natl Acad Sci U S A 104: 10685-90
O'Leary DD, Chou SJ, Sahara S (2007) Area patterning of the mammalian cortex. Neuron 56: 252-69
O'Leary DD, Chou SJ, Hamasaki T, Sahara S, Takeuchi A, Thuret S, Leingärtner A (2007) Regulation of laminar and area patterning of mammalian neocortex and behavioural implications. Novartis Found Symp 288: 141-59; discussion 159-64
Butler SJ, Tear G (2007) Getting axons onto the right path: the role of transcription factors in axon guidance. Development 134: 439-48
Sánchez-Soriano N, Tear G, Whitington P, Prokop A (2007) Drosophila as a genetic and cellular model for studies on axonal growth. Neural Dev 2: 9
Montrasio S, Mlodzik M, Fanto M (2007) A new allele uncovers the role of echinus in the control of ommatidial rotation in the Drosophila eye. Dev Dyn 236: 2936-42
Clarke J (2007) Cell migration: catapulting neurons from the ventricular zone? Curr Biol 17: R176-8
Tawk M, Araya C, Lyons DA, Reugels AM, Girdler GC, Bayley PR, Hyde DR, Tada M, Clarke JD (2007) A mirror-symmetric cell division that orchestrates neuroepithelial morphogenesis. Nature 446: 797-800
Brekke C, Morgan SC, Lowe AS, Meade TJ, Price J, Williams SC, Modo M (2007) The in vitro effects of a bimodal contrast agent on cellular functions and relaxometry. NMR Biomed 20: 77-89
Lowe AS, Beech JS, Williams SC (2007) Small animal, whole brain fMRI: innocuous and nociceptive forepaw stimulation. Neuroimage 35: 719-28
Ashioti M, Beech JS, Lowe AS, Hesselink MB, Modo M, Williams SC (2007) Multi-modal characterisation of the neocortical clip model of focal cerebral ischaemia by MRI, behaviour and immunohistochemistry. Brain Res 1145: 177-89
McAteer MA, Sibson NR, von Zur Muhlen C, Schneider JE, Lowe AS, Warrick N, Channon KM, Anthony DC, Choudhury RP (2007) In vivo magnetic resonance imaging of acute brain inflammation using microparticles of iron oxide. Nat Med 13: 1253-8
Vonrhein C, Blanc E, Roversi P, Bricogne G (2007) Automated structure solution with autoSHARP. Methods Mol Biol 364: 215-30
Schuster EF, Blanc E, Partridge L, Thornton JM (2007) Correcting for sequence biases in present/absent calls. Genome Biol 8: R125
Schuster EF, Blanc E, Partridge L, Thornton JM (2007) Estimation and correction of non-specific binding in a large-scale spike-in experiment. Genome Biol 8: R126
McElwee JJ, Schuster E, Blanc E, Piper MD, Thomas JH, Patel DS, Selman C, Withers DJ, Thornton JM, Partridge L, Gems D (2007) Evolutionary conservation of regulated longevity assurance mechanisms. Genome Biol 8: R132
Dolan J, Walshe K, Alsbury S, Hokamp K, O'Keeffe S, Okafuji T, Miller SF, Tear G, Mitchell KJ (2007) The extracellular leucine-rich repeat superfamily; a comparative survey and analysis of evolutionary relationships and expression patterns. BMC Genomics 8: 320
Bernstein HG, Smalla KH, Bogerts B, Gordon-Weeks PR, Beesley PW, Gundelfinger ED, Kreutz MR (2007) The immunolocalization of the synaptic glycoprotein neuroplastin differs substantially between the human and the rodent brain. Brain Res 1134: 107-12
Guthrie S (2007) Patterning and axon guidance of cranial motor neurons. Nat Rev Neurosci 8: 859-71
Hoffman TL, Javier AL, Campeau SA, Knight RD, Schilling TF (2007) Tfap2 transcription factors in zebrafish neural crest development and ectodermal evolution. J Exp Zoolog B Mol Dev Evol 308: 679-91
Ahmed A, Eickholt BJ (2007) Intracellular kinases in semaphorin signaling. Adv Exp Med Biol 600: 24-37
Eickholt BJ, Ahmed AI, Davies M, Papakonstanti EA, Pearce W, Starkey ML, Bilancio A, Need AC, Smith AJ, Hall SM, Hamers FP, Giese KP, Bradbury EJ, Vanhaesebroeck B (2007) Control of Axonal Growth and Regeneration of Sensory Neurons by the p110delta PI 3-Kinase. PLoS ONE 2: e869
Reber M, Hindges R, Lemke G (2007) Eph receptors and ephrin ligands in axon guidance. Adv Exp Med Biol 621: 32-49
Wilson LJ, Myat A, Sharma A, Maden M, Wingate RJ (2007) Retinoic acid is a potential dorsalising signal in the late embryonic chick hindbrain. BMC Dev Biol 7: 138
Guinazu MF, Chambers D, Lumsden A, Kiecker C (2007) Tissue interactions in the developing chick diencephalon. Neural Develop 2: 25
Chilton JK & Gordon-Weeks PR (2007) Role of microtubules and MAPs during neuritogenesis. In Intracellular Mechanisms for Neuritogenesis (de Curtis, I. ed) Springer : 57-88
Chambers D, Wilson L, Maden M, Lumsden A (2007) RALDH-independent generation of retinoic acid during vertebrate embryogenesis by CYP1B1. Development 134: 1369-83
Reijntjes S, Rodaway A, Maden M (2007) The retinoic acid metabolising gene, CYP26B1, patterns the cartilaginous cranial neural crest in zebrafish. Int J Dev Biol 51: 351-60
Stinchcombe SV, Maden M (2007) Retinoic Acid-induced Alveolar Regeneration: Critical Differences in Strain Sensitivity. Am J Respir Cell Mol Biol
Maden M (2007) Retinoic acid in the development, regeneration and maintenance of the nervous system. Nat Rev Neurosci 8: 755-65
Andreae LC, Peukert D, Lumsden A, Gilthorpe JD (2007) Analysis of Lrrn1 expression and its relationship to neuromeric boundaries during chick neural development. Neural Develop 2: 22
Upton AL, Cordery PM, Thompson ID (2007) Emergence of topography in the developing hamster retinocollicular projection: axial differences and the role of cell death. Eur J Neurosci 25: 2319-28
Suchanek M, Hynynen R, Wohlfahrt G, Lehto M, Johansson M, Saarinen H, Radzikowska A, Thiele C, Olkkonen VM (2007) The mammalian oxysterol-binding protein-related proteins (ORPs) bind 25-hydroxycholesterol in an evolutionarily conserved pocket. Biochem J 405: 473-80
Johansson M, Rocha N, Zwart W, Jordens I, Janssen L, Kuijl C, Olkkonen VM, Neefjes J (2007) Activation of endosomal dynein motors by stepwise assembly of Rab7-RILP-p150Glued, ORP1L, and the receptor betalll spectrin. J Cell Biol 176: 459-71
Maden M, Blentic A, Reijntjes S, Seguin S, Gale E, Graham A (2007) Retinoic acid is required for specification of the ventral eye field and for Rathke's pouch in the avian embryo. Int J Dev Biol 51: 191-200
Graham A (2007) Deconstructing the pharyngeal metamere. J Exp Zoolog B Mol Dev Evol
Graham A, Blentic A, Duque S, Begbie J (2007) Delamination of cells from neurogenic placodes does not involve an epithelial-to-mesenchymal transition. Development