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Hinojosa AJ, Deogracias R, Rico B (2018) The Microtubule Regulator NEK7 Coordinates the Wiring of Cortical Parvalbumin Interneurons.Cell Rep 24: 1231-1242
Denaxa M, Neves G, Burrone J, Pachnis V (2018) Homeostatic Regulation of Interneuron Apoptosis During Cortical Development.J Exp Neurosci 12: 1179069518784277
Hamid FM, Makeyev EV (2017) A mechanism underlying position-specific regulation of alternative splicing.Nucleic Acids Res 45: 12455-12468
Patel DS, Diana G, Entchev EV, Zhan M, Lu H, Ch'ng Q (2017) Quantification of Information Encoded by Gene Expression Levels During Lifespan Modulation Under Broad-range Dietary Restriction in C. elegans.J Vis Exp 16: 126
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Montague K, Guthrie S, Poparic I (2017) In Vivo and In Vitro Knockdown Approaches in the Avian Embryo as a Means to Study Semaphorin Signaling.Methods Mol Biol 1493: 403-416
2016
Sousa-Nunes R, Hirth F (2016) Stem cells and asymmetric cell division in Regenerative Medicine - from Protocol to Patient: 1. Biology of Tissue Regeneration: Third EditionSpringer International : 87-121
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Wefelmeyer W, Puhl CJ, Burrone J (2016) Homeostatic Plasticity of Subcellular Neuronal Structures: From Inputs to Outputs.Trends Neurosci 39: 656-667
Jackson RE, Burrone J (2016) Visualizing Presynaptic Calcium Dynamics and Vesicle Fusion with a Single Genetically Encoded Reporter at Individual Synapses.Front Synaptic Neurosci 8: 21
Gordon-Weeks PR (2016) The role of the drebrin/EB3/Cdk5 pathway in dendritic spine plasticity, implications for Alzheimer's disease.Brain Res Bull 126: 293-299
Dumitrescu AS, Evans MD, Grubb MS (2016) Evaluating Tools for Live Imaging of Structural Plasticity at the Axon Initial Segment.Front Cell Neurosci 10: 268
Marín O (2016) Developmental timing and critical windows for the treatment of psychiatric disorders.Nat Med 22: 1229-1238
Spires-Jones TL, Poirazi P, Grubb MS (2016) Opening up: open access publishing, data sharing, and how they can influence your neuroscience career.Eur J Neurosci 43: 1413-9
Araya C, Carmona-Fontaine C, Clarke JD (2016) Extracellular matrix couples the convergence movements of mesoderm and neural plate during the early stages of neurulation.Dev Dyn 245: 580-9
Mockenhaupt S, Makeyev EV (2015) Non-coding functions of alternative pre-mRNA splicing in development.Semin Cell Dev Biol 47-48: 32-9
Nikolaou N, Meyer MP (2015) Neurobiology: imaging prey capture circuits in zebrafish.Curr Biol 25: R273-5
Hanzel M, Wingate RJ, Butts T (2015) Ex Vivo Culture of Chick Cerebellar Slices and Spatially Targeted Electroporation of Granule Cell Precursors.J Vis Exp 106: e53421
Wefelmeyer W, Cattaert D, Burrone J (2015) Activity-dependent mismatch between axo-axonic synapses and the axon initial segment controls neuronal output.Proc Natl Acad Sci U S A 112: 9757-62
Patel AX, Burdakov D (2015) Mechanisms of gain control by voltage-gated channels in intrinsically-firing neurons.PLoS One 10: e0115431
Chand AN, Galliano E, Chesters RA, Grubb MS (2015) A distinct subtype of dopaminergic interneuron displays inverted structural plasticity at the axon initial segment.J Neurosci 35: 1573-90
Tyson AL, Hilton ST, Andreae LC (2015) Rapid, simple and inexpensive production of custom 3D printed equipment for large-volume fluorescence microscopy.Int J Pharm 494: 651-6
Missaire M, Hindges R (2015) The role of cell adhesion molecules in visual circuit formation: from neurite outgrowth to maps and synaptic specificity.Dev Neurobiol 75: 569-83
Hunter PR, Hendry AC, Lowe AS (2015) Zebrafish brain mapping--standardized spaces, length scales, and the power of N and n.Dev Neurobiol 75: 557-68
Andreae LC, Burrone J (2014) The role of neuronal activity and transmitter release on synapse formation.Curr Opin Neurobiol 27: 47-52
Buckley C, Clarke J (2014) Establishing the plane of symmetry for lumen formation and bilateral brain formation in the zebrafish neural rod.Semin Cell Dev Biol 31: 100-5
Dyer C, Linker C, Graham A, Knight R (2014) Specification of sensory neurons occurs through diverse developmental programs functioning in the brain and spinal cord.Dev Dyn 243: 1429-39
Aigner S, Heckel T, Zhang JD, Andreae LC, Jagasia R (2014) Human pluripotent stem cell models of autism spectrum disorder: emerging frontiers, opportunities, and challenges towards neuronal networks in a dish.Psychopharmacology (Berl) 231: 1089-104
Hamid FM, Makeyev EV (2014) Regulation of mRNA abundance by polypyrimidine tract-binding protein-controlled alternate 5' splice site choice.PLoS Genet 10: e1004771
Povellato G, Tuxworth RI, Hanger DP, Tear G (2014) Modification of the Drosophila model of in vivo Tau toxicity reveals protective phosphorylation by GSK3b.Biol Open 3: 1-11
Hamid FM, Makeyev EV (2014) Emerging functions of alternative splicing coupled with nonsense-mediated decay.Biochem Soc Trans 42: 1168-73
Butts T, Green MJ, Wingate RJ (2014) Development of the cerebellum: simple steps to make a 'little brain'.Development 141: 4031-41
Butts T, Modrell MS, Baker CV, Wingate RJ (2014) The evolution of the vertebrate cerebellum: absence of a proliferative external granule layer in a non-teleost ray-finned fish.Evol Dev 16: 92-100
Butts T, Hanzel M, Wingate RJ (2014) Transit amplification in the amniote cerebellum evolved via a heterochronic shift in NeuroD1 expression.Development 141: 2791-5
Green MJ, Wingate RJ (2014) Developmental origins of diversity in cerebellar output nuclei.Neural Dev 9: 1
Suetterlin P, Drescher U (2014) Target-independent ephrina/EphA-mediated axon-axon repulsion as a novel element in retinocollicular mapping.Neuron 84: 740-52
Clark C, Austen O, Poparic I, Guthrie S (2013) Alpha2-Chimaerin regulates a key axon guidance transition during development of the oculomotor projection.J Neurosci 33: 16540-51
Yap K, Makeyev EV (2013) Regulation of gene expression in mammalian nervous system through alternative pre-mRNA splicing coupled with RNA quality control mechanisms.Mol Cell Neurosci 56: 420-8
Sterratt DC, Lyngholm D, Willshaw DJ, Thompson ID (2013) Standard anatomical and visual space for the mouse retina: computational reconstruction and transformation of flattened retinae with the Retistruct package.PLoS Comput Biol 9: e1002921
Hay DB, Williams D, Stahl D, Wingate RJ (2013) Using Drawings of the Brain Cell to Exhibit Expertise in Neuroscience: Exploring the Boundaries of Experimental CultureScience Education 93 (3): 468-491
Robertshaw E, Matsumoto K, Lumsden A, Kiecker C (2013) Irx3 and Pax6 establish differential competence for Shh-mediated induction of GABAergic and glutamatergic neurons of the thalamus.Proc Natl Acad Sci U S A 110: E3919-26
Antinucci P, Nikolaou N, Meyer MP, Hindges R (2013) Teneurin-3 specifies morphological and functional connectivity of retinal ganglion cells in the vertebrate visual system.Cell Rep 5: 582-92
Levy P, Larsen C (2013) Odd-skipped labels a group of distinct neurons associated with the mushroom body and optic lobe in the adult Drosophila brain.J Comp Neurol 521: 3716-40
Povellato G,Tuxworth RI, Hanger DP,Tear G (2013) Modification of the Drosophila model of in vivo Tau toxicity reveals protective phosphorylation by GSK3βBiology Open Nov 28: bio.201366
van den Brink DM, Banerji O, Tear G (2013) Commissureless regulation of axon outgrowth across the midline is independent of Rab function.PLoS One 8: e64427
Basson MA and Wingate RJ (2013) Congenital hypoplasia of the cerebellum: developmental causes and behavioural consequences.
Hunter PR, Lowe AS, Thompson ID, Meyer MP (2013) Emergent properties of the optic tectum revealed by population analysis of direction and orientation selectivity.J Neurosci 33: 13940-5
Lowe AS, Nikolaou N, Hunter PR, Thompson ID, Meyer MP (2013) A Systems-Based Dissection of Retinal Inputs to the Zebrafish Tectum Reveals Different Rules for Different Functional Classes during Development.J Neurosci 33: 13946-56
Maiorano NA, Hindges R (2013) Restricted perinatal retinal degeneration induces retina reshaping and correlated structural rearrangement of the retinotopic map.Nat Commun 4: 1938
Sousa-Nunes R, Somers WG (2013) Mechanisms of asymmetric progenitor divisions in the Drosophila central nervous system.Adv Exp Med Biol 786: 79-102
Graham A, Shimeld SM (2013) The origin and evolution of the ectodermal placodes.J Anat 222: 32-40
Hu Y, Poopalasundaram S, Graham A, Bouloux PM (2013) GnRH neuronal migration and olfactory bulb neurite outgrowth are dependent on FGF receptor 1 signaling, specifically via the PI3K p110? isoform in chick embryo.Endocrinology 154: 388-99
Butts T, Graham A (2013) Old before their time: the ancient origins of the neural crest.Pigment Cell Melanoma Res 26: 287-89
Girdler GC, Araya C, Ren X, Clarke JD (2013) Developmental time rather than local environment regulates the schedule of epithelial polarization in the zebrafish neural rod.Neural Dev 8: 5
Walker AS, Burrone J, Meyer MP (2013) Functional imaging in the zebrafish retinotectal system using RGECO.Front Neural Circuits 7: 34
2012
Heinrich C, Götz M, Berninger B (2012) Reprogramming of postnatal astroglia of the mouse neocortex into functional, synapse-forming neurons.Methods Mol Biol 814: 485-98
Chen X, Lepier A, Berninger B, Tolkovsky AM, Herbert J (2012) Cultured subventricular zone progenitor cells transduced with neurogenin-2 become mature glutamatergic neurons and integrate into the dentate gyrus.PLoS One 7: e31547
Dai W, Zhang G, Makeyev EV (2012) RNA-binding protein HuR autoregulates its expression by promoting alternative polyadenylation site usage.Nucleic Acids Res 40: 787-800
Hutson TH, Foster E, Dawes JM, Hindges R, Yáñez-Muñoz RJ, Moon LD (2012) Lentiviral vectors encoding short hairpin RNAs efficiently transduce and knockdown LINGO-1 but induce an interferon response and cytotoxicity in central nervous system neurones.J Gene Med 14: 299-315
Butts T, Wilson L and Wingate RJ (2012) Specification of granule cells and Purkinje cells. in M. Manto D. Gruol N. Schmahmann N. Koibuchi and F. Rossi (eds.) Handbook of the Cerebellum and Cerebellar Disorders. Heidelberg: Springer Science and Business Media.
Khandelia P, Yap K, Makeyev EV (2011) Streamlined platform for short hairpin RNA interference and transgenesis in cultured mammalian cells.Proc Natl Acad Sci U S A 108: 12799-804
Calamita P, Fanto M (2011) Slimming down fat makes neuropathic hippo: the Fat/Hippo tumor suppressor pathway protects adult neurons through regulation of autophagy.Autophagy 7: 907-9
Grevellec A, Graham A, Tucker AS (2011) Shh signalling restricts the expression of Gcm2 and controls the position of the developing parathyroids.Dev Biol 353: 194-205
Ch'ng Q (2011) Selecting synaptic partners: GRASPing the role of UNC-6/netrin.BMC Biol 9: 43
Poopalasundaram S, Marler KJ, Drescher U (2011) EphrinA6 on chick retinal axons is a key component for p75(NTR)-dependent axon repulsion and TrkB-dependent axon branching.Mol Cell Neurosci 47: 131-6
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Sousa-Nunes R, Somers WG (2010) Phosphorylation and dephosphorylation events allow for rapid segregation of fate determinants during Drosophila neuroblast asymmetric divisions.Commun Integr Biol 3: 46-9
Tymanskyj SR, Lin S, Gordon-Weeks PR (2010) Evolution of the spatial distribution of MAP1B phosphorylation sites in vertebrate neurons.J Anat 216: 692-704
Fanto M and Charroux B (2010) Book chapter: Atrophin-1. In: Kompoliti K, and Verhagen Metman L (eds.) Encyclopedia of Movement Disorders.Oxford: Academic Press 1: 100-103
Charroux B & Fanto M (2010) The fine line between waste disposal and recycle.
Autophagy, In press : TBA
Pinter R, Hindges R (2010) Perturbations of microRNA function in mouse dicer mutants produce retinal defects and lead to aberrant axon pathfinding at the optic chiasm.PLoS One 5: e10021
Formstone C, & Mason I (2010) Book chapter: The Celsr/Flamingo Family of Protocadherins. In ³Molecular and Functional Diversities of Cadherins and Protocadherins² Ed. K. Yoshida. Research Signpost Books.
Formstone CJ (2010) Book Chapter: 7TM‑Cadherins: Developmental Roles and Future Challenges. In "Adhesion-GPCRs: Structure to Function". Eds. Simon Yona and Martin Stacey
Castaño Z, Gordon-Weeks PR, Kypta RM (2010) The neuron-specific isoform of glycogen synthase kinase-3beta is required for axon growth.J Neurochem
Chaplin N, Tendeng C, Wingate RJ (2010) Absence of an external germinal layer in zebrafish and shark reveals a distinct, anamniote ground plan of cerebellum development.J Neurosci 30: 3048-57
Sahara S, O'Leary DD (2009) Fgf10 regulates transition period of cortical stem cell differentiation to radial glia controlling generation of neurons and basal progenitors.Neuron 63: 48-62
Sousa-Nunes R, Chia W, Somers WG (2009) Protein phosphatase 4 mediates localization of the Miranda complex during Drosophila neuroblast asymmetric divisions.Genes Dev 23: 359-72
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Cardona A, Larsen C, Hartenstein V (2009) Neuronal fiber tracts connecting the brain and ventral nerve cord of the early Drosophila larva.J Comp Neurol 515: 427-40
Yaguchi Y, Yu T, Ahmed MU, Berry M, Mason I, Basson MA (2009) Fibroblast growth factor (FGF) gene expression in the developing cerebellum suggests multiple roles for FGF signaling during cerebellar morphogenesis and development.Dev Dyn
Tolhurst DJ, Smyth D, Thompson ID (2009) The sparseness of neuronal responses in ferret primary visual cortex.J Neurosci 29: 2355-70
Smith MM, Fraser GJ, Mitsiadis TA (2009) Dental lamina as source of odontogenic stem cells: evolutionary origins and developmental control of tooth generation in gnathostomes.J Exp Zoolog B Mol Dev Evol
Smith MM, Fraser GJ, Chaplin N, Hobbs C, Graham A (2009) Reiterative pattern of sonic hedgehog expression in the catshark dentition reveals a phylogenetic template for jawed vertebrates.Proc Biol Sci
Sharpe, P. and Mason, I. (2009) Molecular Embryology Methods and Protocols". Series: Methods in Molecular BiologyHumana Press, Totowa, NJ. 2nd Edition. Approx 400pp Vol. 461.
Eickholt BJ (2008) Functional diversity and mechanisms of action of the semaphorins.Development 135: 2689-94
Ch'ng Q, Sieburth D, Kaplan JM (2008) Profiling synaptic proteins identifies regulators of insulin secretion and lifespan.PLoS Genet 4: e1000283
Kundrát M, Joss JM, Smith MM (2008) Fate mapping in embryos of Neoceratodus forsteri reveals cranial neural crest participation in tooth development is conserved from lungfish to tetrapods.Evol Dev 10: 531-6
Smith MM, Okabe M, Joss J (2008) Spatial and temporal pattern for the dentition in the Australian lungfish revealed with sonic hedgehog expression profile.Proc Biol Sci
Canning CA, Lee L, Luo SX, Graham A, Jones CM (2008) Neural tube derived Wnt signals cooperate with FGF signaling in the formation and differentiation of the trigeminal placodes.Neural Develop 3: 35
Sharpe P, and Mason I Eds. (2008) Molecular Embryology Methods and Protocols\". Series: Methods in Molecular Biology, Humana Press, Totowa, NJ. 2nd Edition 461: Approx 400
Ng J (2008) TGF{beta} signals regulate axonal development through distinct Smad-independent mechanisms.Development 135: 4025-35
Mason I (2008) The avian embryo: an overview.Methods Mol Biol 461: 223-30
Chambers D, Lumsden A (2008) Profiling gene transcription in the developing embryo: microarray analysis on gene chips.Methods Mol Biol 461: 631-55
Mason I (2008) Chick embryos: incubation and isolation.Methods Mol Biol 461: 231-4
Mahmood R, Mason I (2008) In-situ hybridization of radioactive riboprobes to RNA in tissue sections.Methods Mol Biol 461: 675-86
Mason I (2008) Immunohistochemistry on whole embryos.Methods Mol Biol 461: 725-8
Graham A (2008) Whole embryo assays for programmed cell death.Methods Mol Biol 461: 729-34
Graham A (2008) RT-PCR on embryos using degenerate oligonucleotide primers.Methods Mol Biol 461: 657-66
Guthrie S (2008) Transplantation of avian neural tissue.Methods Mol Biol 461: 305-11
Clarke JD (2008) Using fluorescent dyes for fate mapping, lineage analysis, and axon tracing in the chick embryo.Methods Mol Biol 461: 351-61
Maggs AM, Huxley C, Hughes SM (2008) Nerve-dependent changes in skeletal muscle myosin heavy chain after experimental denervation and cross-reinnervation and in a demyelinating mouse model of Charcot-Marie-Tooth disease type 1A.Muscle Nerve 38: 1572-1584
Minchin JE, Hughes SM (2008) Sequential actions of Pax3 and Pax7 drive xanthophore development in zebrafish neural crest.Dev Biol 317: 508-22
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Knight RD, Mebus K, Roehl HH (2008) Mandibular arch muscle identity is regulated by a conserved molecular process during vertebrate development.J Exp Zoolog B Mol Dev Evol
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Grubb MS, Nissant A, Murray K, Lledo PM (2008) Functional maturation of the first synapse in olfaction: development and adult neurogenesis.J Neurosci 28: 2919-32
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Chilton JK & Gordon-Weeks PR (2007) Role of microtubules and MAPs during neuritogenesis.
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Stinchcombe SV, Maden M (2007) Retinoic Acid-induced Alveolar Regeneration: Critical Differences in Strain Sensitivity.Am J Respir Cell Mol Biol
Maden M (2007) Retinoic acid in the development, regeneration and maintenance of the nervous system.Nat Rev Neurosci 8: 755-65
Upton AL, Cordery PM, Thompson ID (2007) Emergence of topography in the developing hamster retinocollicular projection: axial differences and the role of cell death.Eur J Neurosci 25: 2319-28
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Graham A, Blentic A, Duque S, Begbie J (2007) Delamination of cells from neurogenic placodes does not involve an epithelial-to-mesenchymal transition.Development
Mann CJ, Osborn DP, Hughes SM (2007) Vestigial-like-2b (VITO-1b) and Tead-3a (Tef-5a) expression in zebrafish skeletal muscle, brain and notochord.Gene Expr Patterns 7: 827-836
McCormick LJ, Hutt JA, Hazan J, Houart C, Cohen J. (2007) The homeodomain transcription factor drg11 is expressed in primary sensory neurons and their putative CNS targets during embryonic development of the zebrafishGene Expr Patterns 7(3): 289-96
Pla R, Borrell V, Flames N, Marín O (2006) Layer acquisition by cortical GABAergic interneurons is independent of Reelin signaling.J Neurosci 26: 6924-34
Borrell V, Marín O (2006) Meninges control tangential migration of hem-derived Cajal-Retzius cells via CXCL12/CXCR4 signaling.Nat Neurosci 9: 1284-93
Kiecker, C (2006) Head Induction. Chapter in "Cell Signaling and Growth Factors in Development".ed. K. Unsicker and K. Krieglstein, Wiley-VCH, Weinheim.
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Chambers D, Fishell G (2006) Functional genomics of early cortex patterning.Genome Biol 7: 202
Johanson Z, Smith MM, Joss J (2006) Early scale development in Heterodontus (Heterodontiformes; Chondrichthyes): a novel chondrichthyan scale pattern
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McCormick LJ, Hutt JA, Hazan J, Houart C, Cohen J (2006) The homeodomain transcription factor drg11 is expressed in primary sensory neurons and their putative CNS targets during embryonic development of the zebrafish.Gene Expr Patterns
Meyer MP, Smith SJ (2006) Evidence from in vivo imaging that synaptogenesis guides the growth and branching of axonal arbors by two distinct mechanisms.J Neurosci 26: 3604-14
Mann CJ, Hinits Y, Hughes SM (2006) Comparison of neurolin (ALCAM) and neurolin-like cell adhesion molecule (NLCAM) expression in zebrafish.Gene Expr Patterns
Fraser GJ, Berkovitz BK, Graham A, Smith MM (2006) Gene deployment for tooth replacement in the rainbow trout (Oncorhynchus mykiss): a developmental model for evolution of the osteichthyan dentition.Evol Dev 8: 446-57
Wingate R, Kwint M (2006) Imagining the brain cell: the neuron in visual culture.Nat Rev Neurosci 7: 745-52
Reber M, Hindges R, Lemke G (2006) In: Axon Growth and Guidance, Landes Bioscience. Ed. Bagnard D Eph receptors and ephrin ligands in axon guidance.Book chapter In Press
Wilson LJ, Wingate RJ (2006) Temporal identity transition in the avian cerebellar rhombic lip.Dev Biol 297: 508-21
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Chambers D, Mason I (2006) A high throughput messenger RNA differential display screen identifies discrete domains of gene expression and novel patterning processes along the developing neural tube.BMC Dev Biol 6: 9
